BtaEX6093973 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21625314-21648285:-
Coord C1 exon
chr22:21648120-21648285
Coord A exon
chr22:21644990-21645150
Coord C2 exon
chr22:21625314-21625475
Length
161 bp
Sequences
Splice sites
3' ss Seq
GGCTCTCTGTCTCTTTTTAGGGT
3' ss Score
12.8
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAGCCCCTCTTTGCTGCTCGAGTGATCTATGACCTCTTGTTCTTCTTCATGGTCATCATCATTGTCCTTAATCTGATTTTTGGGGTCATCATTGACACCTTTGCCGACCTGAGGAGTGAAAAACAGAAAAAAGAGGAGATATTAAAGACCACGTGCTTTATCTGCG
Seq A exon
GGTTGGAAAGAGACAAGTTTGACAACAAGACCGTCACATTTGAAGAGCACATCAAGGAAGAACACAACATGTGGCATTACCTGTGCTTCATCGTCCTGGTGAAAGTGAAGGACTCCACGGAGTACACAGGGCCCGAAAGTTACGTGGCAGAGATGATCAAG
Seq C2 exon
GAAAGAAACCTAGACTGGTTCCCGAGGATGAGAGCCATGTCCCTGGTCAGCAGCGATTCAGAAGGAGAGCAGAATGAGCTGAGGAACCTGCAGGAGAAGCTGGAGTCCACCATGAAGCTTGTCACCAACCTCTCTGGACAGCTGTCAGAATTAAAGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'72-73,'72-71,73-73=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.389
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(11.3=51.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTTTGCTGCTCGAGTGAT
R:
CTGCAGGTTCCTCAGCTCATT
Band lengths:
254-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]