Special

GgaEX1030858 @ galGal3

Exon Skipping

Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19164031-19176407:+
Coord C1 exon
chr12:19164031-19164196
Coord A exon
chr12:19164912-19165072
Coord C2 exon
chr12:19176246-19176407
Length
161 bp
Sequences
Splice sites
3' ss Seq
TGTATGTGTCACTCTTGTAGGTT
3' ss Score
9.79
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GAACCTCTCTTTGCTGCTAGAGTGATATATGATCTGTTATTCTTCTTCATGGTCATCATTATTGTCCTTAACCTGATTTTTGGTGTGATCATTGATACTTTTGCTGATTTAAGGAGTGAAAAACAGAAGAAAGAAGAGATTTTAAAAACAACTTGCTTTATTTGTG
Seq A exon
GTTTGGAAAGAGATAAGTTTGATAACAAGACAGTCACCTTTGAAGAGCACATTAAAGAAGAGCACAACATGTGGCATTATTTGTGCTTTATCGTGTTAGTGAAAGTAAAAGATTCAACAGAATATACAGGACCAGAAAGTTACGTGGCAGAAATGATCAAG
Seq C2 exon
GAGCGAAACCTGGACTGGTTCCCCCGGATGAGAGCCATGTCCCTCGTCAGCAGCGACTCGGACGGAGAGCAGAACGAGCTGAGGAACCTGCAGGAGAAGCTGGAGTCCACCATGAAGCTGGTGACCAACCTCTCTGGGCAGCTGTCAGAGCTGAAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'66-71,'66-69,67-71=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.389
Domain overlap (PFAM):

C1:
PF0052026=Ion_trans=PD(11.2=51.8)
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCTCTTTGCTGCTAGAGTGA
R:
GTTCCTCAGCTCGTTCTGCTC
Band lengths:
251-412
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]