MmuEX0030545 @ mm9
Exon Skipping
Gene
ENSMUSG00000033590 | Myo5c
Description
myosin VC [Source:MGI Symbol;Acc:MGI:2442485]
Coordinates
chr9:75131954-75135949:+
Coord C1 exon
chr9:75131954-75132017
Coord A exon
chr9:75132740-75132820
Coord C2 exon
chr9:75135856-75135949
Length
81 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTCTTTGCTCTCCAGGCT
3' ss Score
9.87
5' ss Seq
TCGGTTAGA
5' ss Score
2.4
Exon sequences
Seq C1 exon
AACGGATGTCAGAGGTCACCAAGCAGCTTTTGGAGAGCTATGACATCGAAGATGTTAGAAGCAG
Seq A exon
GCTCTCTGTGGAAGATCTGGAACATTTAAATGAAGATGGAGAACTTTGGTTTGCCTACGAAGGACTAAAGAAAGCAACTCG
Seq C2 exon
ATGATCCCAGACTTTAAGCAGCAGATTTCAGAGCTGGAGAGGCAGAAGCAGGATCTTGAATCCCGCCTGAAGGAGCAGGCTGAGAAGATAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033590_MULTIEX2-14/27=13-16
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.000 C2=0.781
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF131661=AAA_13=FE(16.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGATGTCAGAGGTCACCAA
R:
TCTTCTCAGCCTGCTCCTTCA
Band lengths:
151-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: