RnoEX0057439 @ rn6
Exon Skipping
Gene
ENSRNOG00000008356 | Myo5c
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82227704-82229731:+
Coord C1 exon
chr8:82227704-82227767
Coord A exon
chr8:82228489-82228569
Coord C2 exon
chr8:82229551-82229731
Length
81 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTATTTGTTCTCTAGGCT
3' ss Score
9.57
5' ss Seq
TCGGTTAGA
5' ss Score
2.4
Exon sequences
Seq C1 exon
AACGGATGTCAGAGGTCACCAAGCAACTTTTGGAGAGCTATGACATTGAAGACGTTAGAAGCAG
Seq A exon
GCTCTCCGTGGAAGATCTGGAACATTTAAATGAAGATGGAGAACTTTGGTTTGCCTACGAAGGACTAAAGAAAGCAACTCG
Seq C2 exon
CGTTCTGGAGAGCCATTTCCAGTCTCAGAAGGATTGCTATGAAAAAGAGATTGAAGGTCTGAACTTCAAAGTCGTGCATCTGAGCCAAGAAATCAACCACCTGCAGAAGCTGTTCAGAGAAGAGACAGACATCAATGAAAGTATTCGTCATGAAGTCACCAGGCTGACATCAGAAAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.000 C2=0.193
Domain overlap (PFAM):
C1:
PF131661=AAA_13=FE(8.8=100)
A:
PF131661=AAA_13=PD(2.9=25.0)
C2:
PF131661=AAA_13=PU(23.9=73.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGATGTCAGAGGTCACCAA
R:
CAGCTTCTGCAGGTGGTTGAT
Band lengths:
175-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]