HsaEX6074821 @ hg19
Exon Skipping
Gene
ENSG00000128833 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:7604]
Coordinates
chr15:52515741-52517335:-
Coord C1 exon
chr15:52517272-52517335
Coord A exon
chr15:52517098-52517178
Coord C2 exon
chr15:52515741-52515921
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTATCTTCCTTATTTTGCAGGCT
3' ss Score
11.47
5' ss Seq
ACGGTTAGA
5' ss Score
4.22
Exon sequences
Seq C1 exon
AAAAGATGTCAGAGATCACCAAACAACTTCTCGAAAGCTATGACATTGAAGATGTAAGAAGCAG
Seq A exon
GCTCTCTGTGGAAGATCTGGAACATTTAAATGAGGATGGAGAACTTTGGTTTGCTTATGAAGGACTAAAGAAAGCAACACG
Seq C2 exon
TGTTTTGGAGAGCCATTTCCAGTCTCAGAAGGATTGCTATGAAAAGGAGATTGAAGCTTTGAACTTCAAAGTGGTGCATCTCAGTCAAGAAATCAACCACCTGCAGAAGTTATTCAGAGAAGAAAATGACATCAATGAAAGCATCCGTCATGAAGTTACCAGGCTAACATCAGAGAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128833-'29-30,'29-29,30-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.000 C2=0.139
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF131661=AAA_13=PU(26.8=91.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCAAACAACTTCTCGAAAGC
R:
TCTGAATAACTTCTGCAGGTGGT
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)