DreEX6100636 @ danRer10
Exon Skipping
Gene
ENSDARG00000104235 | myo5c
Description
myosin VC [Source:ZFIN;Acc:ZDB-GENE-131127-196]
Coordinates
chr25:4684131-4686184:+
Coord C1 exon
chr25:4684131-4684194
Coord A exon
chr25:4684281-4684361
Coord C2 exon
chr25:4686004-4686184
Length
81 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTTTTTTTTTTCCAGGCT
3' ss Score
10.95
5' ss Seq
TAAGTATGA
5' ss Score
1.43
Exon sequences
Seq C1 exon
CTAAGATGAATCTGATCACGAGGCAGCTGCTTGGTGATGCTACAGAGCAAGATCTCATCCAGAG
Seq A exon
GCTCAATGAAGAAGCCTCTGATAATAACGATGATGGAGCTGATCTAATCACTGCTTTTGATGGCATGGAGCGAGCTGCTAA
Seq C2 exon
GGTGATGGAAACTCAACTGCGAGAGCAGAAAGACGCTCACGAGAGTCAACTGGAAGCTCTGATCTTCAAAAATGAGCATTTAAGCAAAGAGAACGAGCAGCTTCAAGCTTTGTTTCAGGAGAAGAGCGACATTAACCAAAGCATTGGACAGGAAGTGACTCGACTCACCGCTGAGAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104235-'29-35,'29-34,30-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.227 A=0.750 C2=0.689
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAATCTGATCACGAGGCAGC
R:
GCTTGAAGCTGCTCGTTCTCT
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]