BtaEX6053671 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003763 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:58243119-58244952:+
Coord C1 exon
chr10:58243119-58243182
Coord A exon
chr10:58243264-58243344
Coord C2 exon
chr10:58244772-58244952
Length
81 bp
Sequences
Splice sites
3' ss Seq
TCACCCTCTTCATGTTTCAGGCT
3' ss Score
10.13
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
Exon sequences
Seq C1 exon
AAAAGATGTCAGAGATCACCAGACAACTTCTTGAGAGCTATGACATTGAAGATGTAAGAAACAG
Seq A exon
GCTCTCTCTGGAAGATTTGGAACATTTAAATGAGGATGGAGAACTTTGGTTTGCTTATGAAGGACTAAAGAAAGCAACACG
Seq C2 exon
CGTTTTGGAGAACCATTTCCAGTCCCAGAAGGACTGCTATGAAAAGGAGATTGAAGCTCTGAACTTCAAAGTGGTGCATCTAAGTCAGGAAATCAACCACCTGCAGAAATTATTTAGAGAAGAGAATGACATCAATGAAAGTATCCGTCATGAAGTTACCAGGCTAACATCGGAAAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003763-'38-44,'38-43,39-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.000 C2=0.213
Domain overlap (PFAM):
C1:
PF131661=AAA_13=FE(9.5=100)
A:
PF131661=AAA_13=PD(3.6=28.6),PF131661=AAA_13=PU(0.9=7.1)
C2:
PF131661=AAA_13=FE(27.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGTCAGAGATCACCAGACA
R:
TCTGCAGGTGGTTGATTTCCTG
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]