GgaEX7007406 @ galGal4
Exon Skipping
Gene
ENSGALG00000004641 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:8353680-8354425:+
Coord C1 exon
chr10:8353680-8353743
Coord A exon
chr10:8353825-8353905
Coord C2 exon
chr10:8354245-8354425
Length
81 bp
Sequences
Splice sites
3' ss Seq
GATTCTGCCTTGTGTTCTAGGCT
3' ss Score
9.84
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
AAAAGATGTCAGAAGTTACAAAGCAGCTTCTTGAAAGCTATGATTTTGAAGATGTAAGAAGCAG
Seq A exon
GCTGTCCACAGAGGATTTGGAGCACTTAAATGAAGATGGAGAATTGTGGTTTGCTTATGAAGGCTTGAAAAAAGCTACAAG
Seq C2 exon
AGTATTGGAAAGTCACTTCCAGACTCAGAAGGAAAACTATGAAAAGGAGATTGAAGGTTTGAACTTGAAAGTTGAGCATCTTAGCCAAGATATTAATCATCTACAAAAACTATTTCGAGAGGAAAATGACATCAATGATGGTATTCGACTTGAAGTTAGCAGGCTGACTTCAGAAAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641-'32-31,'32-30,33-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=0.107 C2=0.049
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAGAAGTTACAAAGCAGCT
R:
CCTCTCGAAATAGTTTTTGTAGATGA
Band lengths:
180-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]