MmuEX0037003 @ mm9

Exon Skipping

Gene

ENSMUSG00000051977 | Prdm9

Description

PR domain containing 9 [Source:MGI Symbol;Acc:MGI:2384854]

Coordinates

chr17:15680043-15691719:-

Coord C1 exon

chr17:15691652-15691719

Coord A exon

chr17:15690316-15690509

Coord C2 exon

chr17:15680043-15682324

Length

194 bp

Sequences

Splice sites

3' ss Seq

TCCTTTTCCTTCCACTCTAGGTA

3' ss Score

12.34

5' ss Seq

GAGGTGGGC

5' ss Score

6.32

Exon sequences

Seq C1 exon

ATTACCAAGGGAAGAAACTGCTATGAGTATGTGGATGGACAGGACGAGTCCCAAGCCAACTGGATGAG

Seq A exon

GTATGTGAACTGTGCCCGGGATGATGAAGAGCAGAACCTGGTAGCCTTTCAATATCACAGGAAAATCTTCTATCGAACCTGCCGGGTTATCAGACCAGGTTGTGAGCTTCTGGTCTGGTATGGGGATGAGTACGGCCAGGAACTGGGCATTAAGTGGGGAAGCAAGATGAAGAAAGGATTCACAGCAGGAAGAG

Seq C2 exon

AACTAAGGACAGAAATTCATCCTTGTCTTTTGTGCTCTTTGGCCTTCTCAAGTCAGAAATTCCTCACTCAACATATGGAATGGAATCATCGCACTGAAATCTTCCCAGGAACATCTGCAAGAATAAATCCTAAACCAGGAGATCCCTGTTCAGATCAGCTTCAGGAACAACATGTTGATTCACAGAACAAAAATGACAAGGCCAGCAATGAAGTAAAAAGAAAATCCAAACCCAGGCAGAGGATTTCAACAACCTTTCCCAGCACACTCAAAGAACAAATGAGATCTGAGGAAAGTAAGAGAACTGTGGAAGAGCTCAGAACAGGCCAGACAACAAATACAGAGGACACAGTCAAATCATTTATTGCATCAGAAATCTCAAGTATTGAAAGACAATGTGGGCAATATTTCAGTGATAAGTCAAATGTCAATGAGCACCAGAAGACACACACAGGGGAGAAGCCCTATGTTTGCAGGGAGTGTGGGCGGGGCTTTACACAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000051977_CASSETTE1

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

Show structural model

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.345

Domain overlap (PFAM):

C1:

PF0085623=SET=FE(26.2=100)

A:

PF0085623=SET=PD(48.8=62.1)

C2:

PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6)

Main Inclusion Isoform:

ENSMUSP00000131871