MmuEX0037003 @ mm10
Exon Skipping
Gene
ENSMUSG00000051977 | Prdm9
Description
PR domain containing 9 [Source:MGI Symbol;Acc:MGI:2384854]
Coordinates
chr17:15543079-15554755:-
Coord C1 exon
chr17:15554688-15554755
Coord A exon
chr17:15553352-15553545
Coord C2 exon
chr17:15543079-15545360
Length
194 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTCCTTCCACTCTAGGTA
3' ss Score
12.34
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
ATTACCAAGGGAAGAAACTGCTATGAGTATGTGGATGGACAGGACGAGTCCCAAGCCAACTGGATGAG
Seq A exon
GTATGTGAACTGTGCCCGGGATGATGAAGAGCAGAACCTGGTAGCCTTTCAATATCACAGGAAAATCTTCTATCGAACCTGCCGGGTTATCAGACCAGGTTGTGAGCTTCTGGTCTGGTATGGGGATGAGTACGGCCAGGAACTGGGCATTAAGTGGGGAAGCAAGATGAAGAAAGGATTCACAGCAGGAAGAG
Seq C2 exon
AACTAAGGACAGAAATTCATCCTTGTCTTTTGTGCTCTTTGGCCTTCTCAAGTCAGAAATTCCTCACTCAACATATGGAATGGAATCATCGCACTGAAATCTTCCCAGGAACATCTGCAAGAATAAATCCTAAACCAGGAGATCCCTGTTCAGATCAGCTTCAGGAACAACATGTTGATTCACAGAACAAAAATGACAAGGCCAGCAATGAAGTAAAAAGAAAATCCAAACCCAGGCAGAGGATTTCAACAACCTTTCCCAGCACACTCAAAGAACAAATGAGATCTGAGGAAAGTAAGAGAACTGTGGAAGAGCTCAGAACAGGCCAGACAACAAATACAGAGGACACAGTCAAATCATTTATTGCATCAGAAATCTCAAGTATTGAAAGACAATGTGGGCAATATTTCAGTGATAAGTCAAATGTCAATGAGCACCAGAAGACACACACAGGGGAGAAGCCCTATGTTTGCAGGGAGTGTGGGCGGGGCTTTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051977_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.331
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(25.6=100)
A:
PF0085623=SET=PD(51.2=62.1)
C2:
PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGATGGACAGGACGAGT
R:
ACTTCATTGCTGGCCTTGTCA
Band lengths:
254-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types