DreEX0058031 @ danRer10

Exon Skipping

Gene

ENSDARG00000005382 | prdm9

Description

PR domain containing 9 [Source:ZFIN;Acc:ZDB-GENE-040426-1319]

Coordinates

chr12:9743681-9751222:-

Coord C1 exon

chr12:9751155-9751222

Coord A exon

chr12:9748658-9748848

Coord C2 exon

chr12:9743681-9745807

Length

191 bp

Sequences

Splice sites

3' ss Seq

AAACTTGTGTCTTGCTTTAGGTT

3' ss Score

9.87

5' ss Seq

AAGGTAACC

5' ss Score

9.24

Exon sequences

Seq C1 exon

ATTTGCAGAGGAAATAATCAGTATAGTTACATAGATGCAGAGAAAGACACTCACTCTAACTGGATGAA

Seq A exon

GTTTGTTGTGTGCTCAAGGAGTGAGACGGAGCAGAATCTTGTTGCGTTCCAACAAAATGGACGTATTCTGTTCCGCTGTTGCCGCCCCATTAGCCCTGGTCAGGAATTTAGAGTTTGGTATGCTGAGGAATATGCTCAAGGACTCGGCGCCATCTGGGATAAGATCTGGGATAATAAATGCATTTCTCAAG

Seq C2 exon

GTTCAACTGAAGAACAGGCAACTCAGAATTGTCCATGTCCTTTTTGCCATTACTCCTTCCCTACCCTTGTTTATCTGCATGCGCATGTGAAGCGCACGCACCCTAATGAGTACGCACAATTCACACAGACACATCCGCTTGAATCTGAAGCCCATACACCCATCACTGAAGTAGAACAGTGTCTTGTGGCCTCCGATGAAGCGCTTTCAACACAAACGCAGCCGGTGACAGAAAGTCCTCAGGAGCAGATTTCAACCCAAAACGGACAACCCATCCATCAGACTGAAAACTCGGATGAGCCTGATGCATCTGATATATACACTGCTGCAGGTGAAATTTCAGATGAAATACATGCATGTGTTGATTGCGGTCGGTCGTTTTTGAGATCTTGTCATCTGAAGCGACATCAGCGCACCATTCACTCCAAAGAGAAGCCTTATTGCTGCAGCCAATGTAAGAAGTGCTTTAGTCAAGCAACAGGGCTGAAAAGACACCAGCAC

VastDB Features

Vast-tools module Information

Secondary ID

ENSDARG00000005382-'9-8,'9-6,10-8

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.246

Domain overlap (PFAM):

C1:

NO

A:

NO

C2:

PF134651=zf-H2C2_2=WD(100=4.3),PF0009621=zf-C2H2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.3),PF138941=zf-C2H2_4=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF0009621=zf-C2H2=WD(100=3.8)

Main Inclusion Isoform:

ENSDARP00000026323