GgaEX1045884 @ galGal4
Exon Skipping
Gene
ENSGALG00000008053 | PRDM11
Description
PR domain containing 11 [Source:HGNC Symbol;Acc:HGNC:13996]
Coordinates
chr5:21583440-21602572:+
Coord C1 exon
chr5:21583440-21583507
Coord A exon
chr5:21598642-21598829
Coord C2 exon
chr5:21601922-21602572
Length
188 bp
Sequences
Splice sites
3' ss Seq
CCTTGTCACCCTACCCTCAGGTA
3' ss Score
10.15
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATAGTTGACAAGAACAACCGCTACAAATCCATCGATGGGACAGATGAAACCAAAGCAAACTGGATGAG
Seq A exon
GTACGTGATCATATCCCGGGAGGAGAGGGAGCAGAACCTGATGGCCTTCCAGCACAGTGAAAGGATTTACTTCCGTGCCTGTCGTGACATCCGGCCTGGGGAGAAGCTGCGGGTCTGGTACAGTGAGGATTACATGAAGCGGCTGCATAGCATGTCCCAGGAGACCATTAACAGAAATCTCACAACAG
Seq C2 exon
GAGACAAAAAATTACAGAAGGAAAAGTCAGAAAAGAATGCAGATAATCAAGAGGACACAAGGGCTCCACTCCACTTCACCACATTAAAGCAAGGGAAGAGCCCCTACAAACGCAGCTATGACGAGGGGGAGTCCCACCCCCAAACAAAGAAAAAAAAGATTGACCTCATCTTCAAAGATGTCCTGGAGGCCTCTTTGGAGTCTGCCAAATTTGAAGAGAAACAGTTAGCAACAAGTACACCGCTTTCCACAAGAGCAACATCTAAATACCAGGCAGAAGAGATCTTTGAGAGGTGCAGTAGTGCCATGCAGCATGGCTCCCTAAATCTCAGCAGAAACAGAAGCGAAGAGGAGTGGAAGGCCCCTCATGGTTCCTCTTTCAGTTCTGCCAAAGAAGTGGGAGTCCTTGAAGACGAGGAAGAAGAGCCTCTGTCTCTGAAAGCAGACAGCCCTACCGAGCTGTCACTGGCTTCTGCAGAAGGCAACTCCCATGAAATTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008053-'7-20,'7-15,14-20
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.304 A=0.115 C2=0.705
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(22.4=100)
A:
PF0085623=SET=PD(41.8=64.1)
C2:
NO
Main Skipping Isoform:
ENSGALT00000013067fB1285
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACCGCTACAAATCCATCGA
R:
GGCCTCCAGGACATCTTTGAA
Band lengths:
246-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]