RnoEX0069321 @ rn6
Exon Skipping
Gene
ENSRNOG00000008674 | Prdm11
Description
PR/SET domain 11 [Source:RGD Symbol;Acc:1597330]
Coordinates
chr3:81872524-81890776:-
Coord C1 exon
chr3:81890709-81890776
Coord A exon
chr3:81877743-81877930
Coord C2 exon
chr3:81872524-81873135
Length
188 bp
Sequences
Splice sites
3' ss Seq
ACCTGTCCCCTCCCCACCAGGTA
3' ss Score
10.66
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
ATTGTGGACAAGAACAACCGCTACAAGTCCATAGATGGGTCAGATGAGACCAAGGCCAACTGGATGAG
Seq A exon
GTACGTGGTCATTTCCCGGGAGGAGAGGGAGCAGAACCTCCTGGCCTTCCAGCACAGCGAGCGCATCTACTTCCGGGCATGCCGAGACATCCGGCCAGGAGAGCGGCTGCGGGTCTGGTACAGCGAGGACTACATGAAGCGTCTGCACAGCATGTCCCAGGAAACCATCCACCGCAACCTGGCCCGGG
Seq C2 exon
GAGAGAAGAGATTGCAGAGAGAGAAGGCTGAGCAAGCCCTGGATAACCCAGAAGACCTAAGGGGTCCCTCCCATTTCCCTGTGTTGAAGCAGGGCAGAAGTCCTTACAAGCGCAGCTTTGATGAGGGGGACCTCCACCCTCAGGCCAAGAAGAAGAAAATAGACCTCATCTTCAAGGACGTCCTGGAAGCCTCACTGGAGTCTGCTAACGCGGAAGGCCGCCAGCTGGCCCTGAGCACCTCCCTGGTCATCCGGAAAGTCCCCAAGTACCAGGACGATGACTATGGTAGAGCTGCCCTGACACAAGGCATCTGCAGGACCCCAGGGGAAGGGGACTGGAAGGTCCCTCAAAAGGTGGCCAAGGAGCTAGGCCCACTGGAAGATGAAGAGGAGGAGCATACGTCGTTCAAGGCCGACAGCCCCGCTGAGGCCTCTCTGGCATCTGACCCCCACGAGCTGCCCACCACCTCCTTTTGCCCTAACTGCATCCGACTGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008674-'6-13,'6-9,10-13
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=0.477 C2=0.541
Domain overlap (PFAM):
C1:
PF138731=Myb_DNA-bind_5=PU(33.3=91.3)
A:
PF0085623=SET=PD(43.6=64.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGGACAAGAACAACCGCT
R:
GCTTCCAGGACGTCCTTGAAG
Band lengths:
257-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]