MmuEX0036944 @ mm9
Exon Skipping
Gene
ENSMUSG00000075028 | Prdm11
Description
PR domain containing 11 [Source:MGI Symbol;Acc:MGI:2685553]
Coordinates
chr2:92805308-92833588:-
Coord C1 exon
chr2:92833521-92833588
Coord A exon
chr2:92820668-92820855
Coord C2 exon
chr2:92805308-92816018
Length
188 bp
Sequences
Splice sites
3' ss Seq
ACCTGTCCCCTCCCCACCAGGTA
3' ss Score
10.66
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
ATTGTGGACAAGAACAACCGCTACAAGTCCATAGATGGGTCGGATGAGACCAAGGCCAACTGGATGAG
Seq A exon
GTACGTGGTCATTTCCCGGGAGGAGAGGGAGCAGAACCTCCTGGCGTTCCAGCACAGCGAGCGCATCTACTTCCGGGCATGCCGAGACATCCGGCCAGGAGAGCGGCTGCGGGTCTGGTACAGCGAGGACTACATGAAGCGCCTGCATAGCATGTCCCAGGAAACCATCCACCGCAACTTAGCCCGGG
Seq C2 exon
GAGAGAAGAGGTTGCAGAGAGAGAAGGCTGAGCAAGCCCTGGAAAACCCAGAAGACCTAAGGGGTCCCACTCAGTTCCCTGTGTTGAAGCAGGGCAGAAGTCCTTACAAGCGCAGCTTTGATGAGGGAGACATACACCCTCAGGCAAAGAAGAAGAAAATAGATCTCATCTTCAAGGATGTGCTAGAGGCCTCACTGGAGTCTGGTAACGTGGAAGCCCGCCAGCTGGCCCTGAGCACCTCCCTGGTCATCCGGAAAGTCCCCAAGTACCAGGACGATGACTATGGTAGAGCTGCCCTGACGCAAGGCATCTGCAGGACCCCGGGGGAAGGGGACTGGAAGGTCCCTCAAAGGGTGGCCAAAGAGCTGGGCCCACTGGAAGATGAAGAGGAGGAGCCTACATCATTCAAGGCTGACAGCCCTGCAGAGGCCTCTCTGGCATCTGACCCCCATGAGCTGCCTACCACCTCCTTTTGTCCTAACTGCATTCGCCTGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075028-'7-9,'7-8,11-9
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.109 C2=0.412
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(23.4=100)
A:
PF0085623=SET=PD(43.6=64.1)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGACCAAGGCCAACTGG
R:
GCTTCCACGTTACCAGACTCC
Band lengths:
243-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: