BtaEX6060469 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006443 | PRDM11
Description
PR domain containing 11 [Source:HGNC Symbol;Acc:HGNC:13996]
Coordinates
chr15:76124081-76144104:+
Coord C1 exon
chr15:76124081-76124148
Coord A exon
chr15:76139315-76139502
Coord C2 exon
chr15:76143416-76144104
Length
188 bp
Sequences
Splice sites
3' ss Seq
CCTGTCCCCCTCGCCCCCAGGTA
3' ss Score
12.16
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ATTGTGGACAAAAACAACCGCTACAAGTCCATAGATGGGTCAGATGAGACTAAAGCCAACTGGATGAG
Seq A exon
GTACGTGGTCATCTCCCGGGAGGAGAGGGAGCAGAACCTGCTGGCCTTCCAGCACAGCGAGCGCATCTACTTCCGGGCCTGCCGGGACATCCGGCCGGGGGAGCGGCTGCGCGTCTGGTACAGCGAGGACTACATGAAGCGCCTGCACAGCATGTCCCAGGAGACCATCCACCGCAACCTGGCCCGAG
Seq C2 exon
GAGAGAAGAGGTTGCAGAAGGAGAAGTCTGAGCAGGCTCTGGATAACCCAGAAGACCTGAGGGGTCCCCTTCAGCTCCCTGTGTTGAGACAGGGCAAAAGTCCCTACAAGCGTGGCTTTGACGAGGGGGACGTGCACCCCCAGGCCAAGAAGAAGAAGATTGACCTCATTTTCAAGGATGTGCTAGAGGCCTCACTGGAATCCGCAAAGGTAGAAGCCCACCAGCTCGCACTGAGCACTTCCCTGGTCATCAGGAAGGTCCCCAAGCGCCAGAATGACGCCTACGGTCAGTGTGCAATGACGATGTCGCACGGCGTGCAGAATGCCAGTCGGACCCAGGGGGACGGGGACTGGAAGGTGCCCCAAGGGGCTTCCAAGGAGGCAGGCCCCCTGGAGGACGAAGAAGAGGAGCCTTCGTCGTTCAAGGCCGACAGTCCCGCTGAGGCCTCCCTTGCGTCCGACCCTCCCGAGCTGCCCACCACCTCCTTTTGCCCTAACTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006443-'7-11,'7-10,9-11=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=0.477 C2=0.574
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(23.4=100)
A:
PF0085623=SET=PD(43.6=64.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTCAGATGAGACTAAAGCCA
R:
CTGGTGGGCTTCTACCTTTGC
Band lengths:
257-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]