GgaEX1045884 @ galGal3
Exon Skipping
Gene
ENSGALG00000008053 | PRDM11
Description
NA
Coordinates
chr5:24371961-24391379:+
Coord C1 exon
chr5:24371961-24372028
Coord A exon
chr5:24387865-24388052
Coord C2 exon
chr5:24391146-24391379
Length
188 bp
Sequences
Splice sites
3' ss Seq
CCTTGTCACCCTACCCTCAGGTA
3' ss Score
10.15
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATAGTTGACAAGAACAACCGCTACAAATCCATCGATGGGACAGATGAAACCAAAGCAAACTGGATGAG
Seq A exon
GTACGTGATCATATCCCGGGAGGAGAGGGAGCAGAACCTGATGGCCTTCCAGCACAGTGAAAGGATTTACTTCCGTGCCTGTCGTGACATCCGGCCTGGGGAGAAGCTGCGGGTCTGGTACAGTGAGGATTACATGAAGCGGCTGCATAGCATGTCCCAGGAGACCATCAACAGAAATCTCACAACAG
Seq C2 exon
GAGACAAAAAATTACAGAAGGAAAAGTCAGAAAAGAATGCAGATAATCAAGAGGACACAAGGGCTCCACTCCACTTCACCACATTAAAGCAAGGGAAGAGCCCCTACAAACGCAGCTATGACGAGGGGGAGTCCCACCCCCAAACAAAGAAAAAAAAGATTGACCTCATCTTCAAAGATGTCCTGGAGGCCTCTTTGGAGTCTGCCAAATTTGAAGAGAAACAGTTAGCAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008053-'5-13,'5-9,10-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=0.120 C2=0.632
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(22.4=100)
A:
PF0085623=SET=PD(41.8=64.1)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACCGCTACAAATCCATCGA
R:
GGCCTCCAGGACATCTTTGAA
Band lengths:
246-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]