DreEX0057999 @ danRer10
Exon Skipping
Gene
ENSDARG00000074468 | prdm11
Description
PR domain containing 11 [Source:ZFIN;Acc:ZDB-GENE-061221-1]
Coordinates
chr25:7568022-7585705:-
Coord C1 exon
chr25:7585168-7585705
Coord A exon
chr25:7578234-7578421
Coord C2 exon
chr25:7568022-7573961
Length
188 bp
Sequences
Splice sites
3' ss Seq
AGTTTGTTTATTCTTCCCAGGTT
3' ss Score
6.59
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GACATTATCAACAAAGTTTGAAGAGTAGTGATAACTGACAGAACTGCGGAGAGCTTGGAGATGTAAAACTAAAATAGGGGAAAGGCTGTTCATTTTTAAAACCTTAAACTTCACACACAAACCGCCTGCGTAATGTTGCCAATATTTGTTAGGCGCGTTCCCAAAAATGAACGCGCGCGCGAGACGCTCCCTCACACAACTTGACACACTACCTAACTTTCCCTTTCCTGAAATTTCGTGCCCGGTCTGCACAAACGCCGCTTTCTTCCGTTTTCCATGTCATTTCCTGTAATAAAAAGATGGTGGTCATAGCAGAGAGAAGCAGCTGACTGTGGTACAAACATTTGGAGATGATAAACTTTGCATCGCCCGGGACTAGTGAAATCCCCCCGTGCCGTAGCCTCGCCGCCGCGGTCCACGGAGCGGCCGAAACCGAGACGCGCCGCAGCTGAAGAAGACCACCAAAGACCCCGCGACGCACTGCGTATATCCTATAGACG
Seq A exon
GTTTATCCACATTACTTCTGATGAGAGTGAACAGAACCTGAGTGCGTTTCAACATGGTGATCAAATCTACTTTCGAGTGTGTCACAGACTGAAGGTGGGCGAGAAACTTGGTGTTTGGTACAGCAGCGAGTACATGAAGCGACTGCAGAGTGTGTCCCGGGACAGCATTGACCACAATCTGGACACAG
Seq C2 exon
ACACCATGACGCCCATCCCAGCAGCCCTTGAAGAGGATGACCAGGATGTTGATTCTGCCGATGAATCTATTTCTGCCGACCTCCTGGTGGCTGCAGATGAGTCTTCAAAACTCTCAGTGGGTTCGGGTCGTCGGATTCGCAGATTCAAACAGGAGTGGCTGAAGAAGTTCTGGTTTCTCCGTTATTCACCTACACTGAATGAGATGTGGTGCCACGTGTGCCGCCAATACACCGTCCAGTCCTCCCGCACCTCTGCGTTTATCATCGGCTCCAAGCAATTTAAAATCCACACCATTAAACTGCACAGCCAGAGCAATCTGCACAAGAAGTGCCTTCAGCTTTACAAACTTCGAATGCACCCGGAGAAGACAGAGGAGATGTGTCGTAACATGATGACTCTTCTGAATGCTGCCTATCATCTGGCTCTTGAAGGACGGCCGTTTTCTGATCTGCGCCCCTTAGCGGAGCTCCTCAAGAAGTGCGACCTCAAAGTGGTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074468_MULTIEX1-5/6=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.125 C2=0.038
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGCCCGGGACTAGTGAAAT
R:
GAAGACTCATCTGCAGCCACC
Band lengths:
242-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]