RnoEX0069378 @ rn6

Exon Skipping

Gene

ENSRNOG00000021493 | Prdm9

Description

PR/SET domain 9 [Source:RGD Symbol;Acc:1305247]

Coordinates

chr1:57533577-57546982:-

Coord C1 exon

chr1:57546915-57546982

Coord A exon

chr1:57545605-57545798

Coord C2 exon

chr1:57533577-57534998

Length

194 bp

Sequences

Splice sites

3' ss Seq

TTCCTTCCATTCCACTCCAGGTA

3' ss Score

10.14

5' ss Seq

GAGGTGGGT

5' ss Score

7.07

Exon sequences

Seq C1 exon

ATCACCAAGGGAAGAAACTGCTATGAGTATGTGGATGGGCAGGATGAGTCCCAAGCCAACTGGATGAG

Seq A exon

GTATGTGAACTGTGCCCGGGATGACGAAGAGCAGAACCTGGTGGCCTTTCAATATCACAGGAAAATCTTCTATCGGACCTGCCGGGTCATCAGGCCAGGTCGCGAGCTTCTGGTCTGGTATGGGGATGAGTATGGCCAAGAGCTGGGCATCAAGTGGGGAAGCAAGATGAAGAAAGGATTCACAGCAGGAAGAG

Seq C2 exon

AACTAAGGACAGAGATTCATCCTTGTTTTTTGTGCTCTTTGGCCTTCTCAAGTCAGAAATTCCTCACTCAACATGTAGAATGGAATCATCGCACAGAAATCTTCCCAGGAGCATCTGCAAGGATAAATCCTAAGCCAGGAGATCCCTGTCCAGATCAGCTTCAGGAACATTTTGATTCACAGAACAAGAATGACAAAGCCAGCAATGAAGTCAAAAGAAAATCCAAACCCAGGCATAAATGGACAAGACAGAGGATTTCAACAGCCTTTTCCAGTACTCTCAAAGAACAAATGAGATCTGAGGAAAGTAAGAGAACTGTAGAAGAAGAGCTTAGAACAGGCCAGACAACAAATATAGAGGACACAGCCAAATCATTTATTGCATCAGAAACCTCAAGAATTGAAAGGCAATGTGGGCAATGTTTCAGTGATAAGTCAAATGTCAGTGAGCACCAGAGGACACACACAGGGGAGAAGCCCTACATTTGCAGGGAGTGTGGG

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000021493-'12-12,'12-10,13-12

Average complexity

C1

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.309

Domain overlap (PFAM):

C1:

PF0085623=SET=FE(26.5=100)

A:

PF0085623=SET=PD(49.4=62.1)

C2:

PF134651=zf-H2C2_2=WD(100=6.3),PF0009621=zf-C2H2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=6.1)

Main Inclusion Isoform:

ENSRNOP00000060531