MmuEX0041117 @ mm9
Exon Skipping
Gene
ENSMUSG00000046201 | Scaf8
Description
SR-related CTD-associated factor 8 [Source:MGI Symbol;Acc:MGI:1925212]
Coordinates
chr17:3114972-3145158:+
Coord C1 exon
chr17:3114972-3115418
Coord A exon
chr17:3122053-3122114
Coord C2 exon
chr17:3145075-3145158
Length
62 bp
Sequences
Splice sites
3' ss Seq
TCTCTACTCCTCTCTCTCAGGAT
3' ss Score
10.29
5' ss Seq
ATAGTAAGA
5' ss Score
4.74
Exon sequences
Seq C1 exon
GGATGCCGCAGCCGCCGCGGTCAGCGCTTCCTCCTGTGTCTTCGCTGCGCGCTGCAGGTTCCCGCGGCCTAGGCGGCAGGGAGGTGACACAGGAGCCCGTGGGAGGAAGAGGAAGGAGGAGAAGGGGGTGGAGAGTGGAGGGGGCCGAAGCTTGAGTGTGGAGGCCGCTTCCGAGCGAGGCGGAGAAGCAGAGAAGGCGCCGCGCCAGCCCCTCCCCCGCCGCCGACCCGCCCCGGCGGCCTCCGTCCTGCTCACTGCGCCCGCCCCGCGGCCATGCTGGGGCCTCGCCGGCGCTGAGGAGCGTCGCCTGCTCGCAGTGCTCCGCGGCCTCCTGGGCCCGTCGCCCGCCTTTCCGCACGCATCGCACCCGGCCGCCGCCTCTTCCTCCGTCGGGCCCCGGGCCTCTGCGCAGACAACATGGAGGCCGTGAAGACCTTCAACAGCGAG
Seq A exon
GATTGTGCCTCTACTCCTGCTTGTACAGACTGCTTTCCAGCAGCATGGACACAAGAAGCATA
Seq C2 exon
TTGTATTCACTGAATGACTATAAGCCACCCATTTCTAAAGCAAAAATGACCCAAATTACAAAGGCAGCCATCAAAGCTATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046201_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.564 A=0.071 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF079616=MBA1=PU(33.3=75.0)
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTCCTCCGTCGGGCC
R:
AGCTTTGATGGCTGCCTTTGT
Band lengths:
147-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: