RnoEX0078270 @ rn6
Exon Skipping
Gene
ENSRNOG00000016919 | Scaf8
Description
SR-related CTD-associated factor 8 [Source:RGD Symbol;Acc:708362]
Coordinates
chr1:44019059-44045358:+
Coord C1 exon
chr1:44019059-44019410
Coord A exon
chr1:44025234-44025295
Coord C2 exon
chr1:44045275-44045358
Length
62 bp
Sequences
Splice sites
3' ss Seq
TCTCTACTCCTCTCTCTCAGGAT
3' ss Score
10.29
5' ss Seq
ATAGTAAGA
5' ss Score
4.74
Exon sequences
Seq C1 exon
CCCGTGGGAGGAAGAGGAAGGAGGAGAAGGGGGTGGAGAGTGGAGGGGGCCGAAGCTTGAGTGTGGAGGCCGCTTCCGAGCGGGGCGGAGAAGCAGAGAAGGCGCCGCGCCAGCCCCTCCCCCGCCGCCGACCCGCCCCGGCGGCCTCGGTCCTGCTCGCTGCGCCCGCCCCGCGGCCATGCCGGGACCTCACGGGCGCTGAGGAGCGTCTCCAGCTAGCCGTGCTCCGCGGCCTCCTGGGCCCGTCGCCCGCCCTTCCGCACGCAACGCGCCCAGCCGCCGCCTCTTCCTTCGCCGGGCCCCGGGCCTCTGCGCAGACAACATGGAGGCCGTGAAGACCTTCAACAGCGAG
Seq A exon
GATTGTGCCTCTACTCCTGCTTGTACAGACTGCTTTCCAGCAGCATGGACACAAGAAGCATA
Seq C2 exon
TTGTATTCGCTGAATGACTATAAGCCACCCATTTCTAAAGCAAAAATGACCCAGATTACAAAGGCAGCCATCAAAGCTATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016919_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTCCTTCGCCGGGCC
R:
AGCTTTGATGGCTGCCTTTGT
Band lengths:
147-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]