BtaEX0031455 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031917 | SCAF8
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr9:92788357-92829970:+
Coord C1 exon
chr9:92788357-92788754
Coord A exon
chr9:92794231-92794294
Coord C2 exon
chr9:92829887-92829970
Length
64 bp
Sequences
Splice sites
3' ss Seq
TCTCTGCTCCTTTCTCTCAGGAT
3' ss Score
11.18
5' ss Seq
ATAGTAAGA
5' ss Score
4.74
Exon sequences
Seq C1 exon
NNGGGGCGGAGAAGAGAAGGCGCCGCGGCCCGGCCCCTCCCCCCCCGTCCGCCGCCGCCGACCCGCCCCGGCAGCGCCTCTGTTCCCCTGCCCGGCGCTCCGCCTGCCCTAGCGGCCATGCCGGGGCCTCGCCGCCCCTAAGGGAGAGCCCTTCCCCACCAGTGCTTGCCTCGCCTTTTCCCTCGGGCCCGGGGGGGTCGCAGCGGCCCGGCCCCCCACCCCCCGTCCCCGCCGCCGTCGGCGCGCCCGCCCCCTCACACCCCCCACCCTCCTCGCGGCGCCGCCGCCGTCCCCGTCTCGCTCTCCCCACCCAGTGCAGTGGCCGCCGCCTCTTCCGCCGCCGGGCTCCGGGCCTCCGCACCGACAACATGGAGGCTGTGAAAACCTTCAATAGCGAG
Seq A exon
GATTGTGCCTCTCTACTCCTGCTTGTACAGACTGCTTTCCAGCAGCATGGACACAAGAAGCATA
Seq C2 exon
TTGTATTCCCTGAATGACTACAAGCCACCCATTTCTAAAGCGAAAATGACCCAAATTACTAAGGCAGCCATCAAAGCTATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031917_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCCCACCCAGTGCAG
R:
TCGCTTTAGAAATGGGTGGCT
Band lengths:
141-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development