HsaEX0052631 @ hg19
Exon Skipping
Gene
ENSG00000213079 | RBM16
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:20959]
Coordinates
chr6:155054459-155095206:+
Coord C1 exon
chr6:155054459-155055064
Coord A exon
chr6:155063090-155063152
Coord C2 exon
chr6:155095123-155095206
Length
63 bp
Sequences
Splice sites
3' ss Seq
TCTCTACTCCTCTCTCTCAGGAT
3' ss Score
10.29
5' ss Seq
ATAGTAAGA
5' ss Score
4.74
Exon sequences
Seq C1 exon
GCCGCTGCTGCCAGCGCTTCCTCCTCTGTCTTCGCCGAGCGGGGCTGGTTCCTGCGGCCCGAGCGGCGGGGAGGTGAAACAGGAGCCCGTCGGAGGAAGGGGCAGAAGGGAGTGGAGAGTGTAGGGGAAGGGGCTAGAGGGAGGGGGACCGAAACGGAGCGGGGCAGAGAAGAGAAGGCGCCGCGGCCCAGCCCCTCCCCCGCCCGCCGCCGACCCGCCCCGGCAGCGCCTCTGTTCCCTAGAACGGCGCTCCCCCCGCCCTAGCGGCCATGCCGGTGCCGCTCTGCCGCTGAGGGAGCCCTTCCCCGCCAGCGCGTGCCCTTCCACTCCGCCCCGAGGTCGCAGCGGCCCGCTCTCCCGCCAGCGCCCCCTCCTCGCGGCCACGCAGCAGCCCGCGTCTCGCTCTCCCCACCCAGTGCAGTGGCCGCCGCCTCTTCCGCCGCCGGGCTCGGGGCCTCCGCAGCGACAACATGGAGGCCGTGAAGACCTTCAATAGCGAG
Seq A exon
GATTGTGCCTCTACTCCTGCTTGTACAGACTGCTTTTCCAGCAGCATGGACACAAGAAGCATA
Seq C2 exon
TTGTATTCCCTGAATGACTATAAACCACCCATTTCGAAAGCGAAAATGACCCAAATTACTAAGGCAGCCATCAAAGCTATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213079_MULTIEX2-1/4=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCCCACCCAGTGCAG
R:
TCGCTTTCGAAATGGGTGGTT
Band lengths:
141-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)