MmuEX0041266 @ mm10
Exon Skipping
Gene
ENSMUSG00000057182 | Scn3a
Description
sodium channel, voltage-gated, type III, alpha [Source:MGI Symbol;Acc:MGI:98249]
Coordinates
chr2:65507147-65514762:-
Coord C1 exon
chr2:65514472-65514762
Coord A exon
chr2:65508462-65508662
Coord C2 exon
chr2:65507147-65507279
Length
201 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTGCTTTCTCCTCAGTCT
3' ss Score
10.08
5' ss Seq
AACGTTAGT
5' ss Score
1.4
Exon sequences
Seq C1 exon
GCGGTGGCAGCTGCCTCAGCAGCGTCCAGAGACTTCAGTGGGATAGGAGGGTTAGGAGAACTTCTGGAGAGTTCTTCAGAAGCTTCCAAGTTGAGCTCCAAGAGTGCCAAGGAGTGGAGGAATCGGAGGAAGAAGAGGAGACAGAGGGAGCACTTGGAGGGAAACCACAGACCCGAAGGAGACAGGTTTCCCAAGTCGGAATCAGAAGACAGCGTCAAGCGAAGGAGTTTCCTGTTCTCCCTGGATGGGAACCCGCTGAGCGGCGACAAGAAGCTGTGCTCTCCCCATCAG
Seq A exon
TCTCTCTTGAGTATCCGTGGCTCCCTGTTTTCCCCAAGACGCAATAGCAAAACGAGCATTTTCAGCTTCAGAGGTCGGGCGAAGGACGTGGGGTCTGAGAATGACTTTGCGGATGATGAACACAGCACCTTTGAAGATAGCGAGAGCAGGAGAGACTCACTGTTTGTGCCGCACAGACCTGGAGAGCGACGCAACAGTAAC
Seq C2 exon
GGTACCACCACTGAAACAGAAGTCAGGAAGAGAAGGCTAAGTTCTTACCAGATCTCGATGGAAATGCTGGAGGATTCCTCTGGGAGACAAAGAGCCATGAGCATAGCCAGTATCCTGACCAACACGATGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057182_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.474 A=0.597 C2=0.178
Domain overlap (PFAM):
C1:
PF119333=DUF3451=PU(50.4=73.2)
A:
PF119333=DUF3451=FE(46.8=100)
C2:
PF119333=DUF3451=PD(0.7=2.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGAGCTCCAAGAGTGCCAA
R:
GCTCATGGCTCTTTGTCTCCC
Band lengths:
304-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types