RnoEX0078560 @ rn6
Exon Skipping
Gene
ENSRNOG00000005007 | Scn3a
Description
sodium voltage-gated channel alpha subunit 3 [Source:RGD Symbol;Acc:3635]
Coordinates
chr3:51580790-51589170:-
Coord C1 exon
chr3:51588880-51589170
Coord A exon
chr3:51582085-51582285
Coord C2 exon
chr3:51580790-51580922
Length
201 bp
Sequences
Splice sites
3' ss Seq
CCCTCCTGCTTTCTCCTCAGTCT
3' ss Score
10.25
5' ss Seq
AACGTTAGT
5' ss Score
1.4
Exon sequences
Seq C1 exon
GCAGTGGCTGCAGCCTCCGCGGCATCCAGAGACTTCAGTGGAATAGGAGGGTTAGGAGAACTTCTGGAGAGTTCTTCAGAAGCTTCCAAGTTGAGCTCCAAGAGTGCTAAGGAGTGGAGGAACCGGAGGAAGAAGAGGAGACAGAGGGAACACTTGGAGGGAAACCACAGAGCCGATGGAGACAGGTTTCCCAAGTCGGAATCGGAAGACAGTGTCAAACGAAGAAGCTTCCTGCTCTCCCTGGATGGCAACCCGCTGACTGGTGACAAGAAGCTGTGCTCTCCCCACCAG
Seq A exon
TCTCTCTTGAGTATCCGTGGCTCCCTGTTTTCCCCAAGACGCAATAGCAAAACGAGCATTTTCAGCTTCAGAGGTCGGGCGAAGGACGTGGGGTCTGAGAATGACTTTGCAGACGATGAGCACAGCACCTTCGAGGACAGCGAGAGCAGGAGAGACTCCCTGTTTGTGCCGCACAGACCTGGAGAGCGACGCAACAGTAAC
Seq C2 exon
GGTACCACCACTGAAACGGAAGTCAGGAAGAGAAGGCTAAGTTCTTACCAGATTTCGATGGAAATGCTGGAGGATTCCTCTGGAAGACAAAGAGCCATGAGCATAGCCAGTATCCTGACCAACACCATGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005007-'17-18,'17-16,18-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.557 A=0.617 C2=0.393
Domain overlap (PFAM):
C1:
PF119333=DUF3451=PU(50.4=73.2)
A:
PF119333=DUF3451=FE(46.8=100)
C2:
PF119333=DUF3451=PD(0.7=2.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGGAGTGGAGGAACCGGAG
R:
ACTGGCTATGCTCATGGCTCT
Band lengths:
295-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]