MmuEX0042986 @ mm9
Exon Skipping
Gene
ENSMUSG00000031808 | Slc27a1
Description
solute carrier family 27 (fatty acid transporter), member 1 [Source:MGI Symbol;Acc:MGI:1347098]
Coordinates
chr8:74108741-74110607:+
Coord C1 exon
chr8:74108741-74108905
Coord A exon
chr8:74109245-74109391
Coord C2 exon
chr8:74109801-74110607
Length
147 bp
Sequences
Splice sites
3' ss Seq
AGCTGAGTCCTCTTTTGCAGGAG
3' ss Score
6.16
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTGACGTGCTAGTGATGGACGAGCTGGGCTACATGTATTTCCGTGACCGCAGCGGGGACACCTTCCGCTGGCGCGGGGAGAACGTGTCCACCACGGAGGTGGAAGCCGTGCTGAGCCGCCTACTGGGCCAGACGGACGTGGCTGTGTATGGGGTGGCTGTGCCAG
Seq A exon
GAGTGGAGGGGAAAGCTGGCATGGCAGCCATCGCAGATCCCCACAGCCAGTTGGACCCTAACTCAATGTACCAGGAATTACAGAAGGTTCTTGCATCCTATGCTCGGCCCATCTTCCTGCGTCTTCTGCCCCAGGTGGATACCACAG
Seq C2 exon
GCACCTTCAAGATCCAGAAGACCCGGCTGCAGCGTGAAGGCTTTGACCCCCGTCAGACCTCAGACAGGCTCTTCTTTCTAGACCTGAAGCAGGGACGCTATGTACCCCTGGATGAGAGAGTCCATGCCCGCATTTGTGCAGGCGACTTCTCACTCTGAGCCTGGAGAGTGGGCTGGGCCTGGACTCCTGAGACCTGGGAGCCTGACACCCCTCTTCGGGTGCTTCTCCTGCCTGGCCACATGGACAGCAGCACCTGTGAGAGTAGGAAAATGGAACCTGAGTGGCTGGGACCCCTCTCCTACTTCCCACTATGCATCCATTTTGCCTCTGCCTTGATCTTTTTCTCCATCTCTTTTCTCCCTACCCAGCAGGAGCCCCACAAACACATGTTGGCTGCTGTGTCCTGCAGTTGGACCAGTGTCCAGGGGTACAGGCTTCAGGCTGTGACCCACACTGGTACCCACCTCCCTTTCCTATTGTGCCTTAGGTTCATCCACGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031808-'18-17,'18-16,20-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.040 C2=0.019
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(5.5=42.9),PF131931=AMP-binding_C=PU(30.3=41.1)
A:
PF131931=AMP-binding_C=FE(64.5=100)
C2:
PF131931=AMP-binding_C=PD(3.9=5.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTATTTCCGTGACCGCAGC
R:
ATCCAGGGGTACATAGCGTCC
Band lengths:
246-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: