DreEX6018930 @ danRer10
Exon Skipping
Gene
ENSDARG00000006240 | slc27a1a
Description
solute carrier family 27 (fatty acid transporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-050320-112]
Coordinates
chr3:52339994-52349020:+
Coord C1 exon
chr3:52339994-52340158
Coord A exon
chr3:52340242-52340388
Coord C2 exon
chr3:52348142-52349020
Length
147 bp
Sequences
Splice sites
3' ss Seq
GCTCATGTGTGTTTGTACAGGTG
3' ss Score
7.87
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTGATGTTTTGGTAATGGACGAGCTTGGATACATGTATTTCCGAGACCGAAGCGGAGACACGTTTCGTTGGAAAGGAGAGAACGTGTCCACCACTGAAGTAGAGGGAACGCTGAGCGGCCTGTTGAGACAGACTGATGTGGCAGTGTTTGGAGTAAACGTACCAG
Seq A exon
GTGTGGAGGGAAAAGCGGGAATGGCTGCCATCGCTGACTCGACTGGAAGCTTCAACTGTAATTCTTTCCTAAAAGAGGTTCAGCAAGCTCTTCCTCCATATGCACGGCCAATATTTCTACGCATCTGCCCATGTGTAGATACCACAG
Seq C2 exon
GAACGTTTAAAATCCAGAAGACCAGACTGCAAAGGGAAGGATATGATCCACGGCTCACAACTGACCAGATCTACTTCCTAAACTCCAGAGCAGGGCGTTACGAACTTGTCAACGAGGAGCTGTACAATGCATTTGAAGAAGGCAGGATTTCCCTTTAGACAGAGAAGAGAAGTTAGTTTGAAACTACCTGATCTTCTCCTAATCTGTGAACACATACACACAGTGTTACCACAATGCAACAGAAACCACACTGATTTGTTAAGCTAGTATTTAGACATTACCATTGTTTAAAAGAATAATATTGCATCTGATGAGATGTCTTTGATTCGGTAGCCTACTAGAAATCATAAGCTGTCTTAAAAAGGGCAAACCATTTACCCAATATGCAATAGGCAGTTTGACTGAATTATTATTTTAATGCAATATTTTGATTTGATGGCAGCAGAATACAATGTGCACTCCCAACATAAGTAAAACAAATACCCAAACACTAAAGCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006240-'17-16,'17-15,18-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(5.5=42.9),PF131931=AMP-binding_C=PU(30.3=41.1)
A:
PF131931=AMP-binding_C=FE(64.5=100)
C2:
PF131931=AMP-binding_C=PD(3.9=5.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTATTTCCGAGACCGAAGCG
R:
TGACAAGTTCGTAACGCCCTG
Band lengths:
243-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]