RnoEX0082073 @ rn6
Exon Skipping
Gene
ENSRNOG00000018170 | Slc27a1
Description
solute carrier family 27 member 1 [Source:RGD Symbol;Acc:620927]
Coordinates
chr16:20013838-20016190:+
Coord C1 exon
chr16:20013838-20014002
Coord A exon
chr16:20014326-20014472
Coord C2 exon
chr16:20014965-20016190
Length
147 bp
Sequences
Splice sites
3' ss Seq
CAGCTGAGCCCTCTTTGCAGGAG
3' ss Score
3.91
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTGACGTGCTAGTGATGGACGAGCTGGGGTACATGTACTTCCGTGACCGCAGCGGGGATACCTTCCGATGGCGCGGCGAGAACGTATCCACCACGGAGGTGGAAGCCGTGCTGAGCCGCCTGTTGGGCCAGACGGACGTGGCTGTGTATGGAGTGGCTGTGCCAG
Seq A exon
GAGTGGAGGGGAAAGCCGGCATGGCGGCCATTGCAGACCCCCACAACCAGCTGGACCCTAACTCAATGTACCAGGAATTGCAGAAGGTTCTTGCATCCTATGCCCAGCCCATCTTCCTGCGTCTTCTGCCCCAAGTGGATACAACAG
Seq C2 exon
GCACCTTCAAGATCCAGAAGACCCGGCTACAGCGTGAAGGCTTTGACCCCCGCCAGACCTCAGACCGGCTCTTCTTTCTAGACCTGAAACAGGGACGCTACCTACCCCTGGATGAGAGAGTCCATGCCCGCATCTGCGCAGGCGACTTCTCACTCTGAGCCTGGTGAGTGGGATGGCCCTGGACTTGTGAGACCAGGGAGCCGGACACCCCTGTTCAGGTGTTTCTCCTGCCTGGCCACGTGGCCAGCAGCACCTGTGGGTGCAGGAAACTGGAACCTGAGTGGCCGGGTGTCCCTTTCCTACAACCCACTATGCACACATCTAGCCTCTGCCTTGGTCTTTTTCTCCATCTCTTTCCTCCGTGCCCAGCAGGAGCCCCACAGACACATTGGCTGCTGTGTCCTGCAGTGGGACCGGTGTCTAGGGGTCCATGCTGCAGGCTGTGACCCGCACTGGTGCCCACCTCCCTTCCCCATTGTGCCTTAGGTTCCTCCACTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018170-'25-21,'25-19,26-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.080 C2=0.019
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(5.5=42.9),PF131931=AMP-binding_C=PU(30.3=41.1)
A:
PF131931=AMP-binding_C=FE(64.5=100)
C2:
PF131931=AMP-binding_C=PD(3.9=5.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTACTTCCGTGACCGCAG
R:
CTCATCCAGGGGTAGGTAGCG
Band lengths:
250-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]