BtaEX0032990 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016775 | SLC27A1
Description
Bos taurus solute carrier family 27 (fatty acid transporter), member 1 (SLC27A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001033625]
Coordinates
chr7:5532597-5536013:-
Coord C1 exon
chr7:5535849-5536013
Coord A exon
chr7:5535303-5535449
Coord C2 exon
chr7:5532597-5533996
Length
147 bp
Sequences
Splice sites
3' ss Seq
AGCCAGATCTCTGTCTCTAGGAG
3' ss Score
5.97
5' ss Seq
CAGGTGCAG
5' ss Score
4.95
Exon sequences
Seq C1 exon
GTGACGTGCTGGTGATGGATGAGCTGGGCTACATGTACTTCCGGGACCGCAGCGGGGACACCTTCCGCTGGCGTGGGGAGAACGTCTCCACCACTGAGGTGGAAGGCGTGCTAAGTCGCCTTCTGGGCCAGACAGATGTGGCTGTGTATGGAGTGGCTGTGCCAG
Seq A exon
GAGTAGAGGGCAAAGCAGGCATGGCAGCCATCGCAGACCCCCATGGCCGGCTGAGCCCCAACGCACTGTACGAGGAACTGCAGAAGGTGCTGGCGCCCTATGCCCGGCCCATCTTCCTGCGCCTCCTGCCCCAGGTGGACACTACAG
Seq C2 exon
GCACCTTCAAAATTCAGAAGACCCGGCTGCAGCACGAGGGCTTCGACCCACGCCAGACCTCGGACCGGCTCTTCTTCCTGGACCTGAAGCAGGGCCACTACCTGCCTCTGGATCAGGGTGTCTACACCCGCATCTGCTCAGGCGCCTTCGCCCTCTGACACTCCTCTGTTGGCCCAAGACTCCGCACCAGGCCCAGCGAGCAGGGTGGGCTGGAGCCAGACAGACAGCCCTGCCCTGTCCTGGGGCAGAGAAGCCGGATCGCAGGAGGAGCCCTTGTTTCCCACCTTCATCCTCCTCCTCTCCACCAGCTGGCTGCCCCTGCCTGTCTTCCATTCTCGTGTCTGTGTGTCTGTCTGTGCTCCCTGCTTCTGGGCCTCCCCGCTGTCCCTGACTGCCCTCCCCTCTTCCTCCATCTCTCCTCCCCTGCTCACTTCCTGCCAAAAGTAGAACAGACGTTTCTGGGAGCTGCAGTCTGTGCGGGGGCCCACAGCTGTCCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016775_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(11.4=42.9),PF131931=AMP-binding_C=PU(30.3=41.1)
A:
PF131931=AMP-binding_C=FE(64.5=100)
C2:
PF131931=AMP-binding_C=PD(3.9=5.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGGCTACATGTACTTCCG
R:
TGATCCAGAGGCAGGTAGTGG
Band lengths:
258-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development