MmuEX0045062 @ mm9
Exon Skipping
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48443744-48444961:+
Coord C1 exon
chr6:48443744-48443902
Coord A exon
chr6:48444071-48444187
Coord C2 exon
chr6:48444823-48444961
Length
117 bp
Sequences
Splice sites
3' ss Seq
ACACTTTTACTTCTGGACAGGAG
3' ss Score
6.74
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
ACACGTGCCAATGGGGACCTTGGGGACCTTGGAGCCCCTGCCAAATGCCCTGCAGTGGAGGATTCAAGCTGCGCTGGAGAGTGGCAAGAGACACCTCTGCGGGAGAATGCCCTGGACCATGGGCTCAAACAGAAAGCTGCAATATGGGATCTTGCCCAG
Seq A exon
GAGAGAGTTGTGAGACCAGGGACACGGTGTTTACCCTTGACTGTGCCAACCAGTGTCCTCGCAGCTGTGCTGACCTCTGGGATGGTGTTCAGTGTTTACAGGGACCCTGCAGCCCAG
Seq C2 exon
GCTGCCGATGTCCCCCTGGTCAGCTAGTGCAGGATGGACACTGTGTCCCCATCTCCTCTTGCCGCTGTGGCCTGCCCAGTGCCAATGCCTCGTGGGAGCTGGCCCCCACACAGGTGGTCCAGCTGGACTGCCATAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=87.0),PF0182612=TIL=PU(18.9=25.9)
A:
PF0182612=TIL=FE(52.7=100)
C2:
PF0182612=TIL=PD(27.0=42.6),PF053758=Pacifastin_I=PU(37.5=25.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGCCCTGCAGTGGAGGAT
R:
CAGCTGGACCACCTGTGTG
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: