RnoEX0086327 @ rn6
Exon Skipping
Gene
ENSRNOG00000025848 | Sspo
Description
SCO-spondin [Source:RGD Symbol;Acc:1549716]
Coordinates
chr4:78126856-78128027:+
Coord C1 exon
chr4:78126856-78127014
Coord A exon
chr4:78127151-78127267
Coord C2 exon
chr4:78127889-78128027
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTTTTACTTCTGGATCCCAGGTG
3' ss Score
7.08
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
ACACATGCCAGTGGGGACCTTGGGGACCTTGGAGCCCCTGCCAAGTGCCCTGCAGTGGAGGATTCAAGCTACGCTGGAGAGAGGCAAGCGACAACTCTGTGGGAGAATGCCGTGGACCATGGGCTCAAACAGAAAGCTGCAATATGGGATCTTGCCCAG
Seq A exon
GTGAGAGCTGTGAGACCAGGGACACTGTGTTTACCCTGGACTGTGCCAACCAATGTCCTCGCAGCTGTGCTGACCTCTGGGAAGGTGTTCAGTGTCTACAGGGACCCTGCAGCCCAG
Seq C2 exon
GTTGCCGATGCCCCCCTGGTCAGCTGGTGCAGGATGGACACTGCGTGCCTATCTCCTCTTGCCGCTGTGGCCTGCCCAGTGCCAATGCCTCATGGGAGCTGGCCCCCACACAGGTGGTCCAGCTGGACTGCCATAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025848-'97-102,'97-101,98-102
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=87.0)
A:
PF0182612=TIL=PU(63.2=90.0)
C2:
PF0182612=TIL=PD(35.1=42.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTGCCCTGCAGTGGAG
R:
CAGCTGGACCACCTGTGTG
Band lengths:
243-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]