BtaEX6029364 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008542 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr4:113484989-113485945:+
Coord C1 exon
chr4:113484989-113485147
Coord A exon
chr4:113485292-113485408
Coord C2 exon
chr4:113485807-113485945
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCCGACCTTCTGGTCTGCAGGAG
3' ss Score
7.42
5' ss Seq
CAGGTGGCC
5' ss Score
3.48
Exon sequences
Seq C1 exon
ACTTATGTCAGTGGGGTCCCTGGGGGGCCTGGAGCCCCTGCCAGGTGCCCTGCAGTGGGGGATTCCGGCTGCGCTGGAGAGAGGCCGGGATCCCCCCTGGAGGAGGCTGCCGGGGGCCATGGGCTCAGACTGAGAGCTGTAACATGGGGCCTTGCCCAG
Seq A exon
GAGAGAGCTGCGAGGCCCAGGACACCGTGCCCACCCCTGACTGTGCCAACCAGTGCCCAAGAAGCTGTGTTGACCTCTGGGACCGCGTGGAGTGTCTGCAGGGACCATGCCGCCCAG
Seq C2 exon
GCTGCCGCTGTCCCCCTGGCCAGCTGGTACAGGATGGGCACTGTGTGCCTGTGTCTTCTTGCCGTTGCGGCCTCCCCAGCCCCAACGCTTCCTGGGCGCTGGCCCCGGCTGAGGTGGTGCGGCTGGACTGCAGAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008542-'106-106,'106-105,107-106=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=87.0),PF0182612=TIL=PU(14.3=18.5)
A:
PF0182612=TIL=FE(55.7=100)
C2:
PF0182612=TIL=PD(28.6=42.6),PF053758=Pacifastin_I=PU(36.4=25.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATGTCAGTGGGGTCCCTGG
R:
CAGGAAGCGTTGGGGCTG
Band lengths:
251-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]