GgaEX6017962 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr2:344304-344871:+
Coord C1 exon
chr2:344304-344465
Coord A exon
chr2:344536-344652
Coord C2 exon
chr2:344733-344871
Length
117 bp
Sequences
Splice sites
3' ss Seq
CACCAGGCTGCCGTGCACAGGGG
3' ss Score
3.5
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
AGCTGTGCCTCTGGAGCCCCTGGGGGCCGTGGGGGCCCTGCCAGCAGCCCTGCAGTGGGAGTTTCCGCCTGCGGCACCGCCACCTCCAGCGCCTGGCGGGCAGCGGGCAGTGCCAGGGGGCACAAACCCAGAGCGAGAGCTGCAACACAGCCGTGTGCCCAG
Seq A exon
GGGAGGACTGTGAGAAGCAGGGAAGGGTATTCGCCACCACCTGCGCCAACAGCTGCCCCCGCGCCTGCGCCGACCTCTGGCAGCACGTGGAGTGCGTGCAGGGGGGCTGCAAGCCAG
Seq C2 exon
GGTGCCGCTGCCCACAGGGACAGCTGCTGCAGGATGGGCTGTGCGTGCCCACAGCACAGTGCCGCTGCGGGCTGAGCGGGGACAACGGCACCCAGGAGCTGTGGCCGGGACAGGAGGCCACCATTGAGTGCCACAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'90-93,'90-92,91-93=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=87.3)
A:
PF0182612=TIL=PU(63.2=90.0)
C2:
PF0182612=TIL=PD(35.1=42.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGGGAGTTTCCGCCTG
R:
AGTTGTGGCACTCAATGGTGG
Band lengths:
248-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]