MmuEX0047466 @ mm9
Exon Skipping
Gene
ENSMUSG00000020694 | Tlk2
Description
tousled-like kinase 2 (Arabidopsis) [Source:MGI Symbol;Acc:MGI:1346023]
Coordinates
chr11:105110799-105116377:+
Coord C1 exon
chr11:105110799-105110951
Coord A exon
chr11:105114605-105114671
Coord C2 exon
chr11:105116280-105116377
Length
67 bp
Sequences
Splice sites
3' ss Seq
TCGCCACCATTGTTTTTCAGGTT
3' ss Score
8.97
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GCAACAGGAAAGGATAAATTCACAGAGAGAAGAGATAGAAAGGCAACGGAAAATGTTAGCAAAACGGAAACCTCCTGCCATGGGTCAGGCCCCTCCTGCAACCAATGAGCAGAAACAACGGAAAAGCAAGACTAATGGAGCTGAAAATGAAAC
Seq A exon
GTTAACGTTAGCCGAGTACCATGAACAAGAGGAAATCTTCAAACTTAGATTAGGTCATCTTAAGAAA
Seq C2 exon
GAGGAAGCAGAAATCCAGGCAGAGCTGGAAAGGCTGGAAAGGGTTAGGAATCTACACATCAGGGAATTAAAAAGGATACATAATGAAGACAATTCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020694-'22-28,'22-27,24-28
Average complexity
S
Mappability confidence:
89%=80=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.962 A=0.130 C2=0.182
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAGATAGAAAGGCAACGGA
R:
CCTTTCCAGCCTTTCCAGCTC
Band lengths:
168-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: