BtaEX6089445 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015713 | TLK2
Description
tousled-like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
Coordinates
chr19:47648704-47653491:+
Coord C1 exon
chr19:47648704-47648856
Coord A exon
chr19:47652277-47652343
Coord C2 exon
chr19:47653394-47653491
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTCATTATTTTCCAGGTT
3' ss Score
10.97
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GCAACAGGAAAGGATAAATTCACAGAGGGAAGAGATAGAAAGACAACGAAAAATGTTAGCGAAGCGGAAACCTCCTGCCATGGGACAGGCCCCTCCAGCAACCAATGAGCAGAAACAGCGGAAAAGCAAGACCAACGGAGCTGAGAATGAAAC
Seq A exon
GTTAACATTAGCAGAATACCATGAACAAGAAGAAATCTTCAAACTCAGATTAGGTCATCTTAAAAAG
Seq C2 exon
GAGGAAGCAGAGATCCAGGCAGAGCTGGAAAGGCTAGAAAGGGTTAGAAATCTACATATCAGGGAACTAAAAAGGATACATAATGAAGATAATTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015713-'15-18,'15-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.962 A=0.130 C2=0.227
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSBTAT00000020882fB7114
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGAAAGGATAAATTCACAGAGGG
R:
TTTCCAGCTCTGCCTGGATCT
Band lengths:
181-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]