GgaEX1058717 @ galGal3
Exon Skipping
Gene
ENSGALG00000000410 | TLK2
Description
NA
Coordinates
chr27:2290242-2296818:+
Coord C1 exon
chr27:2290242-2290394
Coord A exon
chr27:2293964-2294030
Coord C2 exon
chr27:2296721-2296818
Length
67 bp
Sequences
Splice sites
3' ss Seq
GATCTGTCTCTTCCATGCAGGTT
3' ss Score
10.77
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCAACAGGAAAGGATAAATTCCCAGCGGGAAGAAATAGAAAGGCAACGAAAGATGTTAGCAAAACGGAAGCCACCTGCAATGGGACAGACCCCCCCAGCAAGCAATGAGCAGAAGCAGCGCAAGAACAAGACCAACGGAGCAGAAAATGAAAC
Seq A exon
GTTAACGCTAGCAGAATACCATGAACAGGAAGAAATCTTCAAACTCCGACTGGGTCATCTGAAAAAG
Seq C2 exon
GAAGAAGCAGAGATCCAGGCAGAGCTGGAACGGCTAGAGAGGGTTAGAAATCTACATATCAGGGAATTGAAAAGGATACACAATGAAGATAACTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000410-'16-22,'16-21,17-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.962 A=0.130 C2=0.242
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGGGAAGAAATAGAAAGGCA
R:
CTCTCTAGCCGTTCCAGCTCT
Band lengths:
171-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]