DreEX6016091 @ danRer10
Exon Skipping
Gene
ENSDARG00000010779 | tlk2
Description
tousled-like kinase 2 [Source:ZFIN;Acc:ZDB-GENE-060623-36]
Coordinates
chr3:19556764-19557246:+
Coord C1 exon
chr3:19556764-19556916
Coord A exon
chr3:19557002-19557068
Coord C2 exon
chr3:19557149-19557246
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTTAGTTTACATTCTGACAGGTT
3' ss Score
6.89
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
ACAACAGGAGAGAGTCAACGGGCAGAGGGAGGAAATAGAGAGACAGAGAAAACTGCTAATAAAAAAGAAACCACCCAGCGCCAGTCAGACTCCTCCTCCTAATCTAGAACCCAACAAACGCAAAAGCAAGAGCAACGGCGCCGAGAATGAAAT
Seq A exon
GTTGTCTCTAGCAGAGTACCACGAGCAAGAAGAAATTTTCAAACTGAGACTTGGCCACCTAAAGAAG
Seq C2 exon
GAGGAAGCCGAGATCCAGGTGGAACTGGAGCGGTTGGAGCGTGTGCGTAATCTTCACATCCGCGAGCTCAAGAGAATCCACAATGAAGATAACTCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010779-'16-21,'16-20,17-21=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.827 A=0.130 C2=0.152
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAGGAGAGAGTCAACGGG
R:
TTCCACCTGGATCTCGGCTTC
Band lengths:
176-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]