RnoEX6050061 @ rn6
Exon Skipping
Gene
ENSRNOG00000006285 | Tlk2
Description
tousled-like kinase 2 [Source:RGD Symbol;Acc:1310907]
Coordinates
chr10:93473183-93478116:+
Coord C1 exon
chr10:93473183-93473335
Coord A exon
chr10:93476247-93476313
Coord C2 exon
chr10:93478019-93478116
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTGTTACCATTGTTTTTCAGGTT
3' ss Score
10.6
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GCAACAGGAAAGGATAAATTCACAGAGAGAAGAGATAGAAAGGCAACGGAAAATGTTAGCAAAACGGAAACCCCCTGCCATGGGTCAGGCCCCTCCCGCAACCAATGAGCAGAAACAACGGAAAAGCAAGACCAATGGAGCTGAAAATGAAAC
Seq A exon
GTTAACCTTAGCTGAATACCATGAACAAGAAGAAATCTTCAAACTTAGATTAGGTCATCTTAAGAAA
Seq C2 exon
GAGGAAGCAGAAATCCAGGCAGAACTGGAAAGGCTAGAAAGGGTTAGGAATCTACACATCAGGGAATTAAAAAGGATACATAATGAAGATAATTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006285-'27-27,'27-26,28-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.962 A=0.130 C2=0.182
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGAAGAGATAGAAAGGCAACGG
R:
TCTAGCCTTTCCAGTTCTGCCT
Band lengths:
167-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]