GgaEX1058717 @ galGal4
Exon Skipping
Gene
ENSGALG00000000410 | TLK2
Description
tousled-like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
Coordinates
chr27:2381952-2391655:+
Coord C1 exon
chr27:2381952-2382104
Coord A exon
chr27:2385674-2385740
Coord C2 exon
chr27:2391566-2391655
Length
67 bp
Sequences
Splice sites
3' ss Seq
GATCTGTCTCTTCCATGCAGGTT
3' ss Score
10.77
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCAACAGGAAAGGATAAATTCCCAGCGGGAAGAAATAGAAAGGCAACGAAAGATGTTAGCAAAACGGAAGCCACCTGCAATGGGACAGACCCCCCCAGCAAGCAATGAGCAGAAGCAGCGCAAGAACAAGACCAACGGAGCAGAAAATGAAAC
Seq A exon
GTTAACGCTAGCAGAATACCATGAACAGGAAGAAATCTTCAAACTCCGACTGGGTCATCTGAAAAAG
Seq C2 exon
ACATGCGTGTAGAGAGTACAGAATTCACAAAGAACTGGATCATCCTCGAATAGTTAAGCTATATGACTACTTTTCACTGGATACTGACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000410_MULTIEX2-2/5=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.931 A=0.130 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0006920=Pkinase=FE(10.7=100)
Main Skipping Isoform:
ENSGALT00000000559fB12897
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGGGAAGAAATAGAAAGGCA
R:
CGAGGATGATCCAGTTCTTTGTGA
Band lengths:
178-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]