MmuEX1016538 @ mm10
Exon Skipping
Gene
ENSMUSG00000024940 | Ltbp3
Description
latent transforming growth factor beta binding protein 3 [Source:MGI Symbol;Acc:MGI:1101355]
Coordinates
chr19:5756584-5757175:+
Coord C1 exon
chr19:5756584-5756712
Coord A exon
chr19:5756794-5756931
Coord C2 exon
chr19:5757035-5757175
Length
138 bp
Sequences
Splice sites
3' ss Seq
GCCCTTCTTTCTCTCCCCAGACG
3' ss Score
12.79
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG
Seq A exon
ACGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG
Seq C2 exon
ACGTGGATGAGTGCCAGGATCCGGCTGCTTGCCGCCCTGGCCGCTGCGTCAACCTCCCGGGCTCCTACCGCTGCGAGTGTCACCCGCCCTGGGAGCCCGGGCCCTCCGGCCGCGACTGCCAGCTCCCCGAGAGCCAGGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024940-'43-45,'43-44,44-45
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.032 C2=0.188
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=85.1),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=83.3)
Main Inclusion Isoform:
ENSMUST00000081496fB2308
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATATTGTTTGGGGCAGAGA
R:
CTCTCGGGGAGCTGGCAG
Band lengths:
251-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types