BtaEX6103438 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006747 | LTBP3
Description
latent transforming growth factor beta binding protein 3 [Source:HGNC Symbol;Acc:HGNC:6716]
Coordinates
chr29:44382520-44383431:-
Coord C1 exon
chr29:44383303-44383431
Coord A exon
chr29:44383062-44383199
Coord C2 exon
chr29:44382520-44382681
Length
138 bp
Sequences
Splice sites
3' ss Seq
CGCGCTTTTCCTCCCCTCAGACG
3' ss Score
10.85
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
ACATCGATGAATGCATATTGTTTGGGGCGGAGATATGCAAGGAGGGCAAGTGCGTGAACACGCAGCCCGGCTACGAGTGCTATTGCCAGCACGGATTCTACTACGACTCGAACCTGCTGGAATGCGTGG
Seq A exon
ACGTGGACGAGTGTTTGGACGAGTCTAATTGCCGGAACGGAGTGTGTGAGAATACGCGCGGTGGTTACCGCTGTGCCTGCACTCCCCCGGCCGAGTACAGCCCGGTGCAGCGCCAGTGTCTGAGCCCAGAAGAGATGG
Seq C2 exon
AGCGTGCCCCGGAGCGGCGGGACGTGTGCTGGGGCCAGCGCGGAGATGACGGCATGTGTGCGGGGCCCCTGGCCGGGCCCGCCCTCACCTTCGATGACTGCTGCTGTCGCCAGGGTCGAGGTTGGGGAGCCCAGTGCCGTCCGTGCCCGCCGCGCGGCGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006747-'26-31,'26-29,27-31=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.043 C2=0.018
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=85.1)
C2:
PF0068312=TB=PU(88.1=67.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATATTGTTTGGGGCGGAGA
R:
CTCCCCAACCTCGACCCTG
Band lengths:
246-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]