RnoEX0051389 @ rn6
Exon Skipping
Gene
ENSRNOG00000020813 | Ltbp3
Description
latent transforming growth factor beta binding protein 3 [Source:RGD Symbol;Acc:62057]
Coordinates
chr1:221114100-221115021:+
Coord C1 exon
chr1:221114100-221114228
Coord A exon
chr1:221114313-221114450
Coord C2 exon
chr1:221114860-221115021
Length
138 bp
Sequences
Splice sites
3' ss Seq
GCCCTTCTTTCTCTCCGCAGATG
3' ss Score
15.02
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGTAAGGAGGGCAAGTGCGTGAATACGCAACCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTATTACGACGGCAACCTGCTGGAGTGCGTGG
Seq A exon
ATGTGGATGAGTGCTTGGATGAGTCCAACTGCAGGAACGGAGTGTGTGAGAACACACGCGGAGGCTACCGCTGCGCCTGCACACCGCCCGCAGAGTACAGCCCCGCGCAGCGCCAGTGTCTGAGCCCGGAGGAGATGG
Seq C2 exon
AGCATGGCCCAGAGCGACGAGAAGTATGCTGGGGCCAGCGCGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTCGATGACTGTTGCTGCCGCCAGGGCCGTGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCGCGTGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020813-'29-42,'29-40,30-42
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.064 C2=0.064
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=85.1),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0068312=TB=PU(92.5=67.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGTAAGGAGGGCAAGTGC
R:
CACGGTCTGCACTGGGTAC
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]