MmuEX1016903 @ mm10
Exon Skipping
Gene
ENSMUSG00000025409 | Mbd6
Description
methyl-CpG binding domain protein 6 [Source:MGI Symbol;Acc:MGI:106378]
Coordinates
chr10:127284335-127285900:-
Coord C1 exon
chr10:127285532-127285900
Coord A exon
chr10:127284698-127284774
Coord C2 exon
chr10:127284335-127284485
Length
77 bp
Sequences
Splice sites
3' ss Seq
ATTATTTCCCCCACTTTCAGCCC
3' ss Score
8.6
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CACCCTCAGCTGCCCATGCATCACCCCGTCCCTCTCAGCGGCGGCCTCGCCGGCCCCCAACTGTCTTGCGGTTGCTAGAAGGGGGAGGCCCTCAGACCCCTAGACGGACTCGTCCTCGGGCCCCTGCTCCTGTCCCTCAGCCCTTTCCTCTCCCAGAGCCATCCCAGCCTATTCTCCCCTCTGTGCTGTCCCTACTGGGACTCCCCACCCCTGGCCCTTCCCACTCGGATGGAAGCTTTAACCTTTTGGGGTCAGATGCACACCTTCCTCCTCCCCCAGCCCTCTCCTCAGGGAGCCCTCCCCAGCCCAGGCACCCCATTCAGCCCTCTCTGCCTGGGACCACCAGTGGCAGCCTCAGCAGTGTGCCAG
Seq A exon
CCCCACCCACCCTCATAGCTTTAAATTCTGCGCTGCTGGCTGCCAGCCTGGATCCCCCTTCGGGGACACCCCCCCAG
Seq C2 exon
CCCTGTGTCCTGAGTGCCCCCCAACCTGGACCACCTACCTCCAGTGTCACCACGGCAACTACTGACCCGGGGGCCTCCTCTCTGGGCAAGGCCCCCTCCAACTCAGGGAGACCCCAACTTCTTAGCCCTCTGCTGAGTGCCAGCCTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025409-'12-14,'12-13,13-14
Average complexity
S*
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.994 A=0.868 C2=0.856
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGGGGTCAGATGCACACC
R:
TGGTGACACTGGAGGTAGGTG
Band lengths:
178-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types