BtaEX0021554 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010616 | MBD6
Description
methyl-CpG binding domain protein 6 [Source:HGNC Symbol;Acc:HGNC:20445]
Coordinates
chr5:56278462-56280784:-
Coord C1 exon
chr5:56279732-56280784
Coord A exon
chr5:56278896-56279557
Coord C2 exon
chr5:56278462-56278615
Length
662 bp
Sequences
Splice sites
3' ss Seq
ACCTCTCTTTTTCTTTGCAGGTG
3' ss Score
13.72
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CCCCTCGGTGGAGGGGCCCGGGGCACCCCCCTTTCTTGCTAGCAGCCTACTCTCTGCAGCCGCCAAGGCACAGCACCCCCAATTCCCCCCTCCCAGCACTTTACAGGGCCAAAGGCCCCGTGCCCAGGCACCCTCAGCTTCCCACTCCTCATTGCCCCGTCCCTCTCAGCGTCGTCCCCGCAGACCCCCAACTGTGTTGCGATTGCTAGAAGGGGGGGGGCCTCAAGCCCCTAGGCGGAGCCGTCCTCGGGCCCCTGCTCCCACCCCCCAATCTTTTCCTCTGCCGGAGCCATCCCAACCAATTCTCCCTTCTGTGCTGTCCCTGCTGGGACTCCCCACCCCTGGCCCTTCCCACTCTGACGGAAGCTTTAACCTTTTGGGGTCAGAGGCACACCTTCCTCCTCCCCCCACCCTCTCCTCAGGGAGCTCTCCCCAGCCCACGCACCCCATCCCGCCTGCCCTCCCTGGGACCACCAGTGGCAGCCTCAGCAGTGTGCCAG
Seq A exon
GTGCCCCTGCCCCACCAGCTGCCTCCAAAGCCCCCCTAGTCCCCAGCCCTGTGCTTCAAAGCCCATCTGAAGCGCTTGGGATGGGGGCCGGCCCAGCCGGCCCTCTGCCTCCCCTGGCTGGTGGGGAGGCTTTCCCTTTCCCCAGTCCCGAGCAGGGCCTGGCGCTGAGTGGAGCCGGCTTCCCCGGGATGCTAGGGACCTTGCCCCTCCCTCTGAGTCTGGGACAACCTCCACCTTCTCCATTGCTTAGCCACAGTTTATTTGGCGTGCTGGCTGGGGGAGGGGGACAACCTCCCCCTGAGCCCCTCCTCCCCCCACCAGGGGGACCTGGCCCTCCCCTAGCCCCAGGTGAGCCCGAAGGGCCTTCACTTTTGGTGGCTTCCCTGCTTCCACCACCCCCCTCAGACCTTCTTCCACCCCCTTCTGCACCTCCTAGCAACCTCCTTGCCTCTTTCCTGCCCTTGTTGGCCCTGGGCCCCACAGCTGGGGATGGGGAGGGATCTGCAGAGGGAGCCGGGGGTCCAAGTGGGGAGACATTTTCAGGTTTGGGAGACCTGCCCCCCCTGCTGTTCCCCCCCCTTTCAGCTCCCCCCACCCTCATAGCTTTAAATTCTGCGCTGCTGGCTGCCAGCCTGGATCCCCCCTCGGGGACGCCCCCCCAG
Seq C2 exon
CCCTGTGTCCTGAGCGCCCCCCAACCTGGACCACCTACCTCCAGTGTCACCACGGCAACTACTGACCCGGGGGCCTCCTCTCTGGGCAAGGCCCCCTCCAACTCAGGGAGACCCCCTCAACTCCTTAGCCCTCTGCTGAGTGCCAGCCTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010616-'7-6,'7-4,8-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.986 A=0.919 C2=0.942
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGCGATTGCTAGAAGGGG
R:
TGGTGACACTGGAGGTAGGTG
Band lengths:
358-1020
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development