RnoEX0052992 @ rn6
Exon Skipping
Gene
ENSRNOG00000006209 | Mbd6
Description
methyl-CpG binding domain protein 6 [Source:RGD Symbol;Acc:1311050]
Coordinates
chr7:70573848-70576058:-
Coord C1 exon
chr7:70575012-70576058
Coord A exon
chr7:70574184-70574842
Coord C2 exon
chr7:70573848-70574001
Length
659 bp
Sequences
Splice sites
3' ss Seq
GAATTTGTTTTCTTTTACAGGTG
3' ss Score
12.3
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGGCCCCACAGTGGAGGGGCCTGGGGCACCCCCATTCCTTGCTAGCAGCCTGCTCTCTGCAGCAGCCAAGGCCCAGCAACCCCAGCTGCCCCCTCCCAGCACTTTACAGGGCCGAAGGCCCCGTGCCCAGGCCCCCTCAGCTTCCCATGCATCACCCCGTCCCTCTCAGCGGCGTCCTCGCCGGCCCCCAACTGTCTTGAGGTTGCTAGAAGGGGGAGGCCCTCAAAGCCCTAGACGGAGCCGTCCTCGGGCCCCTGCTCCTGTCCCTCAGCCCTTTCCTCTCCCAGAGCCGTCCCAGCCTATTCTCCCCTCTGTGCTGTCCCTACTGGGACTCCCCACCCCTGGCCCTTCCCACTCGGATGGAAGCTTTAACCTTTTGGGGTCAGATGCACACCTTCCTCCTCCCCCAGCCCTCTCCTCAGGGAGCCCTCCCCAGCCCAGGCACCCCATTCAGCCCTCTCTGCCTGGGACCACCAGTGGCAGCCTCAGCAGTGTGCCAG
Seq A exon
GTGCCCCTGCCCCACCAGCTGCCTCCAAAGCCCCCGTAGTCCCCAGCCCTGTGCTTCAAAGCCCATGTGACAAAGGGCTGGGGTTGGGGGCAGGCCCAGCCTGCCCTCTGCCTCCCTTGGCTGGTGAAGAGGCTTTCCCTTTCCCCAGCCCTGAGCAGGGCCTGGCGCTCAGCGGAGCTGGCTTCCCGGGGATGCTGGGGGCCTTGCCTCTCCCTCTGAGTCTGGGACAGCCTCCACCTTCTCCATTACTTAGCCACAGTTTATTTGGTGTGCTGGCTGGGGCAGGGCAGCCTCCTCCTGAGCCCCTGCTGCCCCCACCAGGGGGACCTGGCCCTCCCTTAGCCCCAGGCGAGCCTGAAGGGCCTTCACTCTTGGTGGCTTCTCTGCTCTCACCACCCCCTTCTGACCTCCTCCCCCCTCCTGCACCCCCTAGCAACCTCCTTGCCTCTTTTCTGCCCCTGTTGGCCCTGGGCCCCACAGCTGGGGATGGAGAAGGATCTGCAGAGGGAGCTGGGGGTCCAAATGGGGAGCCATTTTCAGGTTTGGGAGACCTGCCCCCCCTACTATTCCCCCCACTTTCAGCCCCACCCACCCTCATAGCTTTAAATTCTGCGCTGCTGGCTGCCAGCCTGGATCCCCCCTCGGGGACACCCCCCCAG
Seq C2 exon
CCCTGTGTCCTGAGTGCCCCCCAACCTGGACCACCTACCTCCAGTGTCACCACGGCAACTACTGACCCGGGGGCCTCCTCTCTGGGCAAGGCCCCCTCCAACTCAGGGAGACCCCCTCAACTTCTTAGCCCTCTGCTGAGTGCCAGCCTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006209-'7-10,'7-9,8-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.989 A=0.877 C2=0.942
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGTTGCTAGAAGGGGGAG
R:
TGGTGACACTGGAGGTAGGTG
Band lengths:
355-1014
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]