MmuEX1023343 @ mm10
Exon Skipping
Gene
ENSMUSG00000030683 | Sez6l2
Description
seizure related 6 homolog like 2 [Source:MGI Symbol;Acc:MGI:2385295]
Coordinates
chr7:126963265-126966916:+
Coord C1 exon
chr7:126963265-126963461
Coord A exon
chr7:126963565-126963757
Coord C2 exon
chr7:126966602-126966916
Length
193 bp
Sequences
Splice sites
3' ss Seq
ATTCCATCTTCACTGCAGAGGTC
3' ss Score
-3.3
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
CTTGAATGTTCGCGAAGGGGATATGCTAACACTGTTCGACGGGGACGGTCCGAGCGCTCGAGTCCTGGCCCAGCTGCGAGGACCTCAGCCGCGCCGCCGCCTCCTCTCCTCTGGACCTGATCTCACTCTGCAGTTTCAGGCACCCCCTGGTCCCCCAAATCCGGGCCTAGGCCAGGGTTTCGTGTTACATTTCAAAG
Seq A exon
GTCCCGAGAAACGATACGTGCCCGGAGCTACCACCACCTGAGTGGGGCTGGAGGACAGCATCCCACGGGGACCTTATCCGGGGTACAGTGCTCACCTATCAATGCGAGCCTGGCTATGAACTACTGGGATCAGACATCCTCACTTGCCAATGGGACCTGTCCTGGAGCGCGGCGCCACCTGCCTGCCAAAAGA
Seq C2 exon
GGATTTTGAGAAGACAACAGGGGCTGTTTTGAGGAGATGGCAGAAGCTCAGGCCTCTGTGAGCCCTGTTTCCAGGCAATCTGCTAAGACCCTGGAAACCTCTAACCTGTCTGTCCTGTCCCAGTCATGACTTGTGCTGACCCTGGCGAGATCACCAATGGCCATCGGACTGCCTCAGATGCTGGTTTCCCTGTGGGCTCCCACGTCCAGTATCGCTGTCTGCCAGGGTACAGCCTGGAAGGAGCAGCTGTGCTCACCTGCTACAGCCGGGACACAGGCACACCCAAGTGGAGTGATCGGGTCCCCAAATGCGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030683-'15-25,'15-24,16-25
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.507 A=0.121 C2=0.046
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(58.7=95.5)
A:
PF0008415=Sushi=WD(100=84.8)
C2:
PF0008415=Sushi=WD(100=92.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGAATGTTCGCGAAGGGGA
R:
TGAGCTTCTGCCATCTCCTCA
Band lengths:
247-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types