DreEX6015600 @ danRer10
Exon Skipping
Gene
ENSDARG00000076052 | sez6l2
Description
seizure related 6 homolog (mouse)-like 2 [Source:ZFIN;Acc:ZDB-GENE-091204-189]
Coordinates
chr3:15096091-15099836:-
Coord C1 exon
chr3:15099640-15099836
Coord A exon
chr3:15097067-15097261
Coord C2 exon
chr3:15096091-15096285
Length
195 bp
Sequences
Splice sites
3' ss Seq
ATACCTTTTATTTCTTGCAGAAG
3' ss Score
9.44
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
TTTGAACATACGCCACAATGACGTTCTCACTCTGTTTGATGGCCATGATCTGATGTCGCACGTGATTGGTCAGTACATGGGCTCGAGAGAAAGGTTCAGGGTTGTATCGGGAGGTTCGGAGGTCACCATTCAGTTTCAGAGCGATCCCGATGACTCCACGTTTATACTGAGCCAAGGCTTTCTCATCCACTACAGAG
Seq A exon
AAGTGGAGCCGAATGACACGTGTTCTGCTCTTCCACAAATTGAGTTCGGCTGGAGCAGCTCCTCCCACCCGTCTCTGGTCAGAGGAAGTGTGTTGACCTATCAGTGTCAGCCGGGTTATGATATCGTCGGCTCTGACATCATTACCTGCCAATGGGACCTCACTTGGAGTAACAGCCCGCCCACCTGTGTGAAAA
Seq C2 exon
TCCAGCAGTGTCCTGACCCAGGAGAAGTGGTCAATGGAGCTCGCTCTGTACATCCCGAGTCTGGTTTCGCTGTTGGAACGGTGGTACGCTTCACATGTAACCAGGGCTATCAGCTGGAGGGCCCGAGTCAGATATCCTGCCATGGCAGAGACACCGGAATGCCCAAGTGGAGCGACCGCAGCCCGAAGTGTGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076052-'15-16,'15-14,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.045
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(58.7=95.5)
A:
PF0008415=Sushi=WD(100=84.8)
C2:
PF0008415=Sushi=WD(100=92.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGATGTCGCACGTGATTGG
R:
ATGTGAAGCGTACCACCGTTC
Band lengths:
245-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]