RnoEX6004974 @ rn6
Exon Skipping
Gene
ENSRNOG00000027098 | Sez6l2
Description
seizure related 6 homolog like 2 [Source:RGD Symbol;Acc:1565281]
Coordinates
chr1:198396296-198400206:+
Coord C1 exon
chr1:198396296-198396492
Coord A exon
chr1:198396594-198396788
Coord C2 exon
chr1:198400015-198400206
Length
195 bp
Sequences
Splice sites
3' ss Seq
GTATTCCATCTTCACTGCAGAGG
3' ss Score
6.9
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
CTTGAATGTTCGCGAAGGGGATATGCTAACACTGTTCGACGGTGATGGCCCGAGCGCTCGAGTCCTGGCCCAGCTGCGGGGGCCTCAGCCACGCCGCCGCCTCCTCTCCTCTGGACCTGATCTCACTCTGCAGTTTCAGGCACCCCCTGGGCCTCCAAATCCGGGCCTAGGCCAGGGTTTCGTGTTACACTTCAAAG
Seq A exon
AGGTCCCGCGGAACGATACGTGCCCGGAACTGCCACCTCCTGAGTGGGGCTGGAGGACAGCATCCCACGGGGACCTTATCCGGGGCACCGTGCTCACTTACCAATGCGAGCCTGGCTACGAACTACTGGGATCAGACATCCTCACTTGCCAATGGGACCTGTCCTGGAGCGCGGCGCCACCTGCCTGCCAAAAGA
Seq C2 exon
TCATGACTTGTGCTGACCCTGGTGAGATCACTAATGGCCACCGGACTGCCTCAGATGCTGGTTTTCCTGTGGGCTCCCATGTCCAGTATCGATGTCTGCCAGGATACAGCCTAGAGGGGGCAGCTGTGCTCACCTGCTACAGCCGGGACACGGGCACACCCAAGTGGAGCGATCGGGTCCCCAAATGCGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027098-'17-28,'17-25,18-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.507 A=0.121 C2=0.046
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(58.7=95.5)
A:
PF0008415=Sushi=WD(100=84.8)
C2:
PF0008415=Sushi=WD(100=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGAATGTTCGCGAAGGGGA
R:
TCCGGTGGCCATTAGTGATCT
Band lengths:
242-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]