BtaEX6109668 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007955 | SEZ6L2
Description
Bos taurus seizure related 6 homolog (mouse)-like 2 (SEZ6L2), mRNA. [Source:RefSeq mRNA;Acc:NM_001045927]
Coordinates
chr25:26635072-26637785:+
Coord C1 exon
chr25:26635072-26635268
Coord A exon
chr25:26635388-26635582
Coord C2 exon
chr25:26637594-26637785
Length
195 bp
Sequences
Splice sites
3' ss Seq
TCGCTGTCTGTCCCCTGCAGAAG
3' ss Score
10.26
5' ss Seq
AGAGTGAGC
5' ss Score
4.22
Exon sequences
Seq C1 exon
CTTGAATGTGCGCGAAGGGGATATGCTGACGCTGTTCGATGGGGACGGTCCAAGTGCACGAGTCCTGGCCCAGCTGCGAGGGCCTCAACCGCGCCGCCGCCTCCTCTCCTCTGGGTCCGACCTCACGCTGCAGTTCCAGGCACCGCCCGGACCCCCCAACCCGGGCCTGGGCCAGGGTTTCGTGTTGCACTTCAAAG
Seq A exon
AAGTCCCGAGGAACGACACGTGCCCCGAGCTGCCGCCTCCGGAGTGGGGCTGGAGGACGGCCTCCCACGGGGACCTGATCCGGGGCACGGTGCTTACTTATCAGTGCGAGCCTGGTTATGAGCTGCTCGGCTCCGACATTCTCACCTGCCAATGGGACCTGTCCTGGAGCGCAGCGCCGCCCGCCTGCCAAAAGA
Seq C2 exon
TCATGACTTGTGCCGACCCAGGTGAGATCACCAATGGGCACCGTACCACCTCCGATGCTGGCTTCCCGGTTGGCTCCCATGTCCAGTACCGCTGTCTGCCCGGGTACAGCCTGGAGGGGGCGGCCGTGCTCACCTGCTACAGCCGGGACACAGGCACGCCCAAGTGGAGCGACCGGGTCCCCAAGTGCGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007955-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.358 A=0.121 C2=0.108
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(58.7=95.5)
A:
PF0008415=Sushi=WD(100=84.8)
C2:
PF0008415=Sushi=WD(100=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGTGCGCGAAGGGGATAT
R:
GTGGTACGGTGCCCATTGG
Band lengths:
243-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]