MmuEX6002170 @ mm10
Exon Skipping
Gene
ENSMUSG00000046318 | Ccbe1
Description
collagen and calcium binding EGF domains 1 [Source:MGI Symbol;Acc:MGI:2445053]
Coordinates
chr18:66071201-66083247:-
Coord C1 exon
chr18:66083095-66083247
Coord A exon
chr18:66076308-66076411
Coord C2 exon
chr18:66071201-66071321
Length
104 bp
Sequences
Splice sites
3' ss Seq
GAGCCTATCTCCTTTCCCAGGGC
3' ss Score
7.55
5' ss Seq
AAGGTACGC
5' ss Score
10.4
Exon sequences
Seq C1 exon
ATATCGATGAATGTGCCACCAGCAATACCACTCTCTGTGCACATATCTGCATCAACACCATGGGCAGCTACCACTGTGAGTGTCGGGAGGGCTACATCCTTGAGGACGATGGGAGGACCTGCACAAGGGGAGACAAATACCCCAATGACACTG
Seq A exon
GGCATGAAGAGAAGTCCGAGAATGAGGTGAAAGCCGGGACCTGCTGCGCCACATGCAAAGAGTTCTCCCAGATGAAGCAGACCGTGCTGCAGCTGAAACAGAAG
Seq C2 exon
ATGGCGCTGCTCCCCAACAATGCCGCTGAACTGGGCAAGTATGTCAATGGTGACAAGGTACTGGCCTCAAACGCCTACCTTCCAGGACCTCCTGGCCTGCCTGGGGGACAGGGCCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046318-'16-20,'16-18,18-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=0.248 C2=0.756
Domain overlap (PFAM):
C1:
PF126622=cEGF=PD(10.7=5.8),PF146701=FXa_inhibition=WD(100=71.2)
A:
NO
C2:
PF0139113=Collagen=PU(30.0=36.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGATGAATGTGCCACCAGC
R:
GGAGGTCCTGGAAGGTAGGC
Band lengths:
243-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types