DreEX6083267 @ danRer10
Exon Skipping
Gene
ENSDARG00000086158 | ccbe1
Description
collagen and calcium binding EGF domains 1 [Source:ZFIN;Acc:ZDB-GENE-090506-7]
Coordinates
chr21:10547892-10556136:+
Coord C1 exon
chr21:10547892-10548029
Coord A exon
chr21:10551053-10551159
Coord C2 exon
chr21:10556025-10556136
Length
107 bp
Sequences
Splice sites
3' ss Seq
ATCATGTCATCTCTTTGCAGCTC
3' ss Score
9.58
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
ACATTGATGAATGTGCCAACAATAACGAGACTGTGTGCTCACAGATGTGTGTGAACACTCCCGGCAGCTACCGGTGCGACTGCCACAGCGGCTTCTACCTGGAGGATGATGGGAAGACATGCACCAAGGGCGAGAGAG
Seq A exon
CTCCACTCTTTGAAAAATCAGACAACGTCATGAAAGAAGGCACGTGTTCGGCCACATGCGAGGACTTCCATCAGATGAAGATGACTGTTCTCCAACTCAAACAGAAG
Seq C2 exon
ATGTCCTTATTGTCGAGCAACACCGAGATCAATAAGCAGATGACCAATGAAAAAATGATGATGACGACAAATTCATTTTTACCTGGACCTCCAGGGCCTCCTGGGCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086158-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.139 C2=1.000
Domain overlap (PFAM):
C1:
PF126622=cEGF=PD(10.3=6.4),PF146701=FXa_inhibition=WD(100=78.7)
A:
NO
C2:
PF0139113=Collagen=PU(23.9=28.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGAATGTGCCAACAATAACGA
R:
AGGAGGCCCTGGAGGTCC
Band lengths:
236-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]